Spanki is a set of tools to facilitate analysis of alternative splicing from RNA-Seq data. Spanki compiles quantitative and qualitative information about junction alignments from input BAM files, and analyzes junction-level splicing along with pairwise-defined splicing events. A simulator is also included to evaluate junction detection performance.

  • License: GPLv3
  • 1962 total downloads
  • Last upload: 2 years and 2 months ago

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v0.5.1
  • osx-64  v0.5.1
To install this package with conda run one of the following:
conda install -c bioconda spanki
conda install -c bioconda/label/cf201901 spanki

Description

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