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bioconda / packages / simka

Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.

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Type Size Name Uploaded Downloads Labels
conda 10.4 MB | linux-64/simka-1.5.3-h077b44d_5.tar.bz2  1 year and 5 months ago 293 main
conda 10.4 MB | linux-64/simka-1.5.3-hdcf5f25_4.tar.bz2  3 years and 24 days ago 339 main
conda 8.9 MB | osx-64/simka-1.5.3-hdf58011_4.tar.bz2  3 years and 24 days ago 1460 main
conda 10.4 MB | linux-64/simka-1.5.3-hdcf5f25_3.tar.bz2  3 years and 25 days ago 196 main
conda 10.2 MB | linux-64/simka-1.5.3-hd03093a_3.tar.bz2  3 years and 27 days ago 198 main
conda 9.0 MB | osx-64/simka-1.5.3-h66d0458_3.tar.bz2  3 years and 27 days ago 64 main
conda 8.8 MB | osx-64/simka-1.5.3-h6151dfb_2.tar.bz2  4 years and 3 months ago 77 main
conda 10.1 MB | linux-64/simka-1.5.3-hd03093a_2.tar.bz2  4 years and 3 months ago 330 main
conda 8.6 MB | osx-64/simka-1.5.3-h87af4ef_1.tar.bz2  5 years and 2 months ago 1503 main
conda 10.2 MB | linux-64/simka-1.5.3-h9a82719_1.tar.bz2  5 years and 2 months ago 383 main
conda 8.7 MB | osx-64/simka-1.5.3-h7475705_0.tar.bz2  5 years and 4 months ago 242 main
conda 9.9 MB | linux-64/simka-1.5.3-he513fc3_0.tar.bz2  5 years and 4 months ago 336 main
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