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bioframe
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public |
Pandas utilities for tab-delimited and other genomic files
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2020-12-03 |
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metachip
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public |
HGT detection pipeline
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2020-12-03 |
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alevin-fry
|
public |
alevin-fry is a tool for the efficient processing of single-cell data based on RAD files produced by alevin
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2020-12-03 |
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crisprme
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public |
CRISPRme, tool package for CRISPR experiments assessment and analysis.
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2020-12-02 |
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feature_merge
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public |
Merge features in GFF files
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2020-12-02 |
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bioconductor-complexheatmap
|
public |
Make Complex Heatmaps
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2020-12-02 |
|
adapt
|
public |
A package to efficiently design activity-informed nucleic acid diagnostics for viruses.
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2020-12-02 |
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megalodon
|
public |
Nanopore modified base and sequence variant detection.
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2020-12-02 |
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artic-tools
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public |
A set of tools for working with the ARTIC bioinformatic pipeline.
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2020-12-02 |
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kleborate
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public |
A tool to screen Klebiella genome assembiles for: MLST sequence type, species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.), ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb), virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2), antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations, and K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.
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2020-12-02 |
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gnali
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public |
gNALI (gene nonessentiality and loss-of-function identifier) is a tool for finding PLoF gene variants.
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2020-12-02 |
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solvebio
|
public |
The SolveBio Python client
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2020-12-02 |
|
parent-map
|
public |
Analyze parental contributions to evolved or engineered protein or DNA sequences
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2020-12-02 |
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jcvi
|
public |
Python utility libraries on genome assembly, annotation and comparative genomics
|
2020-12-01 |
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metabinkit
|
public |
Set of programs to perform taxonomic binning.
|
2020-12-01 |
|
gamma
|
public |
Tool for Gene Annotation and Microbial Mutation Assessment
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2020-12-01 |
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lukasa
|
public |
Fast and accurate mapping of proteins against eukaryotic genomes
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2020-12-01 |
|
trnascan-se
|
public |
tRNA detection in large-scale genome sequence
|
2020-12-01 |
|
sansa
|
public |
Structural variant annotation
|
2020-12-01 |
|
virsorter
|
public |
VirSorter2 -- A multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes
|
2020-12-01 |
|
genomescope2
|
public |
Reference-free profiling of polyploid genomes
|
2020-12-01 |
|
rmblast
|
public |
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.
|
2020-12-01 |
|
gtdbtk
|
public |
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
|
2020-11-30 |
|
mirge3
|
public |
Comprehensive analysis of small RNA sequencing Data
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2020-11-30 |
|
orthofinder
|
public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
|
2020-11-30 |
|
mosca
|
public |
MOSCA - Meta-Omics Software for Community Analysis
|
2020-11-30 |
|
submission-tool-validator
|
public |
This tool helps user to validate submissions in the client side before submitting to PRIDE.
|
2020-11-30 |
|
parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2020-11-30 |
|
shortstack
|
public |
ShortStack: Comprehensive annotation and quantification of small RNA genes
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2020-11-29 |
|
abnumber
|
public |
AbNumber - Antibody numbering using ANARCI
|
2020-11-27 |
|
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines
|
2020-11-27 |
|
peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results
|
2020-11-27 |
|
seqscreen
|
public |
SeqScreen was created to sensitively assign taxonomic classifications, functional annotations, and biological processes of interest to single, short DNA sequences (50bp-1,000bp).
|
2020-11-27 |
|
encyclopedia
|
public |
EncyclopeDIA is library search engine comprised of several algorithms for DIA data analysis
|
2020-11-27 |
|
tb-profiler
|
public |
Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from WGS data
|
2020-11-27 |
|
methplotlib
|
public |
Plot methylation data obtained from nanopolish
|
2020-11-27 |
|
bioconductor-bambu
|
public |
Reference-guided isoform reconstruction and quantification for long read RNA-Seq data
|
2020-11-27 |
|
ganon
|
public |
ganon: a read classification tool using Interleaved Bloom Filters
|
2020-11-27 |
|
scepia
|
public |
Single Cell Epigenome-based Inference of Activity
|
2020-11-27 |
|
gimmemotifs
|
public |
Motif prediction pipeline and various motif-related tools
|
2020-11-27 |
|
matchms
|
public |
Python library for fuzzy comparison of mass spectrum data and other Python objects
|
2020-11-27 |
|
bakta
|
public |
Rapid & standardized annotation of bacterial genomes & plasmids.
|
2020-11-27 |
|
medaka
|
public |
Neural network sequence error correction.
|
2020-11-26 |
|
deepacvir
|
public |
Detecting novel human viruses from DNA reads with reverse-complement neural networks.
|
2020-11-26 |
|
deepacstrain
|
public |
Predicting pathogenic potentials of novel strains of known bacterial species.
|
2020-11-26 |
|
deepac
|
public |
Predicting pathogenic potentials of novel DNA with reverse-complement neural networks.
|
2020-11-26 |
|
biofluff
|
public |
Exploratory analysis and visualization of high-throughput sequencing data
|
2020-11-26 |
|
ananse
|
public |
ANANSE: ANalysis Algorithm for Networks Specified by Enhancers - Prediction of key transcription factors in cell fate determination using enhancer networks
|
2020-11-26 |
|
kma
|
public |
KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2020-11-26 |
|
variantmap
|
public |
Interactive heatmap for multi-sample structural variant analysis
|
2020-11-26 |