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isoquant
|
public |
IsoQuant is a tool for reference-based analysis of long RNA reads.
|
2022-05-27 |
|
freyja
|
public |
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples
|
2022-05-27 |
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ibdmix
|
public |
ibdmix: estimate introgression by IBD
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2022-05-27 |
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crispresso2
|
public |
A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments
|
2022-05-27 |
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decifer
|
public |
DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF)
|
2022-05-26 |
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metacerberus
|
public |
Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
|
2022-05-26 |
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clippy
|
public |
An intuitive and interactive peak caller for CLIP data
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2022-05-26 |
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genome_updater
|
public |
genome_updater: bash script to download/update snapshots of refseq/genbank
|
2022-05-26 |
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last
|
public |
LAST finds & aligns related regions of sequences.
|
2022-05-26 |
|
truvari
|
public |
Structural variant comparison tool for VCFs
|
2022-05-26 |
|
wgdi
|
public |
Whole Genome Duplication Identification
|
2022-05-26 |
|
picard-slim
|
public |
Java tools for working with NGS data in the BAM format.
|
2022-05-26 |
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picard
|
public |
Java tools for working with NGS data in the BAM format
|
2022-05-26 |
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abismal
|
public |
abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads
|
2022-05-25 |
|
falco
|
public |
falco is a C++ implementation of FastQC to assess the quality of sequence reads.
|
2022-05-25 |
|
perl-text-csv_xs
|
public |
Text::CSV_XS - comma-separated values manipulation routines
|
2022-05-25 |
|
gget
|
public |
gget enables efficient querying of genomic databases
|
2022-05-25 |
|
pcaone
|
public |
PCAone - Principal Component Analysis All in One
|
2022-05-25 |
|
fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2022-05-25 |
|
fgbio-minimal
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2022-05-25 |
|
jcast
|
public |
Jcast retrieves splice junction information and translates into amino acids
|
2022-05-24 |
|
odgi
|
public |
An optimized dynamic genome/graph implementation
|
2022-05-24 |
|
pango-designation
|
public |
Repository for suggesting new lineages that should be added to the current
|
2022-05-24 |
|
curare
|
public |
A Customizable and Reproducible Analysis Pipeline for RNA-Seq Experiments.
|
2022-05-24 |
|
somaticseq
|
public |
An ensemble approach to accurately detect somatic mutations
|
2022-05-24 |
|
ngs-smap
|
public |
SMAP is an analysis tool for stack-based NGS read mapping
|
2022-05-24 |
|
phylobayes-mpi
|
public |
A Bayesian software for phylogentic reconstrunction using mixture models
|
2022-05-24 |
|
hocort
|
public |
HoCoRT - Host Contamination Removal Tool
|
2022-05-24 |
|
minigraph
|
public |
Proof-of-concept seq-to-graph mapper and graph generator
|
2022-05-24 |
|
perl-devel-checklib
|
public |
check that a library is available
|
2022-05-24 |
|
snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2022-05-24 |
|
btllib
|
public |
Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab
|
2022-05-24 |
|
mimseq
|
public |
Modification-induced misincorporation tRNA sequencing.
|
2022-05-24 |
|
cptac
|
public |
Python packaging for CPTAC data
|
2022-05-24 |
|
proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
|
2022-05-24 |
|
snakesv
|
public |
snakeSV: Flexible framework for large-scale SV discovery
|
2022-05-24 |
|
ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2022-05-24 |
|
metaphor
|
public |
Metaphor - Metagenomic Pipeline for Short Reads
|
2022-05-24 |
|
scprep
|
public |
Tools for loading and preprocessing biological matrices in Python.
|
2022-05-24 |
|
svdss
|
public |
Structural Variant Discovery from Sample-specific Strings
|
2022-05-24 |
|
libcifpp
|
public |
Library containing code to manipulate mmCIF and PDB files
|
2022-05-24 |
|
perl-libwww-perl
|
public |
The World-Wide Web library for Perl
|
2022-05-24 |
|
scar
|
public |
scAR (single cell Ambient Remover) is a package for denoising multiple single cell omics data.
|
2022-05-24 |
|
gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2022-05-24 |
|
perl-mce
|
public |
Many-Core Engine for Perl providing parallel processing capabilities
|
2022-05-24 |
|
gfastats
|
public |
The swiss army knife for genome assembly.
|
2022-05-24 |
|
matchtigs
|
public |
Different algorithms for computing small and minimum plain text representations of kmer sets.
|
2022-05-24 |
|
dfast
|
public |
DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline
|
2022-05-24 |
|
spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome
|
2022-05-24 |
|
secapr
|
public |
Process sequence-capture FASTQ files into alignments for phylogenetic analyses. Integrates allele phasing.
|
2022-05-24 |