bioconda / packages

Package Name Access Summary Updated
isoquant public IsoQuant is a tool for reference-based analysis of long RNA reads. 2022-05-27
freyja public Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples 2022-05-27
ibdmix public ibdmix: estimate introgression by IBD 2022-05-27
crispresso2 public A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments 2022-05-27
decifer public DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF) 2022-05-26
metacerberus public Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data 2022-05-26
clippy public An intuitive and interactive peak caller for CLIP data 2022-05-26
genome_updater public genome_updater: bash script to download/update snapshots of refseq/genbank 2022-05-26
last public LAST finds & aligns related regions of sequences. 2022-05-26
truvari public Structural variant comparison tool for VCFs 2022-05-26
wgdi public Whole Genome Duplication Identification 2022-05-26
picard-slim public Java tools for working with NGS data in the BAM format. 2022-05-26
picard public Java tools for working with NGS data in the BAM format 2022-05-26
abismal public abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads 2022-05-25
falco public falco is a C++ implementation of FastQC to assess the quality of sequence reads. 2022-05-25
perl-text-csv_xs public Text::CSV_XS - comma-separated values manipulation routines 2022-05-25
gget public gget enables efficient querying of genomic databases 2022-05-25
pcaone public PCAone - Principal Component Analysis All in One 2022-05-25
fgbio public A set of tools for working with genomic and high throughput sequencing data, including UMIs 2022-05-25
fgbio-minimal public A set of tools for working with genomic and high throughput sequencing data, including UMIs 2022-05-25
jcast public Jcast retrieves splice junction information and translates into amino acids 2022-05-24
odgi public An optimized dynamic genome/graph implementation 2022-05-24
pango-designation public Repository for suggesting new lineages that should be added to the current 2022-05-24
curare public A Customizable and Reproducible Analysis Pipeline for RNA-Seq Experiments. 2022-05-24
somaticseq public An ensemble approach to accurately detect somatic mutations 2022-05-24
ngs-smap public SMAP is an analysis tool for stack-based NGS read mapping 2022-05-24
phylobayes-mpi public A Bayesian software for phylogentic reconstrunction using mixture models 2022-05-24
hocort public HoCoRT - Host Contamination Removal Tool 2022-05-24
minigraph public Proof-of-concept seq-to-graph mapper and graph generator 2022-05-24
perl-devel-checklib public check that a library is available 2022-05-24
snakeobjects public Snakeobjects, an object-oriented workflow management system based on snakemake 2022-05-24
btllib public Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab 2022-05-24
mimseq public Modification-induced misincorporation tRNA sequencing. 2022-05-24
cptac public Python packaging for CPTAC data 2022-05-24
proteinortho public Proteinortho is a tool to detect orthologous genes within different species. 2022-05-24
snakesv public snakeSV: Flexible framework for large-scale SV discovery 2022-05-24
ena-webin-cli public Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI). 2022-05-24
metaphor public Metaphor - Metagenomic Pipeline for Short Reads 2022-05-24
scprep public Tools for loading and preprocessing biological matrices in Python. 2022-05-24
svdss public Structural Variant Discovery from Sample-specific Strings 2022-05-24
libcifpp public Library containing code to manipulate mmCIF and PDB files 2022-05-24
perl-libwww-perl public The World-Wide Web library for Perl 2022-05-24
scar public scAR (single cell Ambient Remover) is a package for denoising multiple single cell omics data. 2022-05-24
gubbins public Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. 2022-05-24
perl-mce public Many-Core Engine for Perl providing parallel processing capabilities 2022-05-24
gfastats public The swiss army knife for genome assembly. 2022-05-24
matchtigs public Different algorithms for computing small and minimum plain text representations of kmer sets. 2022-05-24
dfast public DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline 2022-05-24
spaln public Map and align a set of cDNA/EST or protein sequences onto a genome 2022-05-24
secapr public Process sequence-capture FASTQ files into alignments for phylogenetic analyses. Integrates allele phasing. 2022-05-24

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