|
rmats
|
public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
|
2019-04-22 |
|
bioconductor-massspecwavelet
|
public |
Processing Mass Spectrometry spectrum by using wavelet based algorithm
|
2019-04-22 |
|
perl-db-file
|
public |
Perl5 access to Berkeley DB version 1.x.
|
2019-04-22 |
|
bioconductor-biocparallel
|
public |
This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.
|
2019-04-22 |
|
bioconductor-qvalue
|
public |
This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values and local FDR values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. The local FDR measures the posterior probability the null hypothesis is true given the test's p-value. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.
|
2019-04-22 |
|
ucsc-liftover
|
public |
Move annotations from one assembly to another
|
2019-04-21 |
|
abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
|
2019-04-21 |
|
groot
|
public |
A tool for resistome profiling of metagenomic samples.
|
2019-04-20 |
|
cromwell
|
public |
A Workflow Management System geared towards scientific workflows described in WDL
|
2019-04-20 |
|
maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2019-04-20 |
|
cutadapt
|
public |
trim adapters from high-throughput sequencing reads
|
2019-04-20 |
|
cnv_facets
|
public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
|
2019-04-19 |
|
perl-compress-raw-zlib
|
public |
Basic utilities for writing tests.
|
2019-04-19 |
|
circos-tools
|
public |
circos-tools provides several utility add-on scripts, such as for bundling links
|
2019-04-19 |
|
perl-math-random
|
public |
Random Number Generators
|
2019-04-19 |
|
perl-time-hires
|
public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2019-04-19 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2019-04-19 |
|
seqhax
|
public |
A collection of next-gen sequence data utilities
|
2019-04-19 |
|
perl-inline-c
|
public |
C Language Support for Inline
|
2019-04-19 |
|
amap
|
public |
AMAP is a multiple sequence alignment program based on sequence annealing.
|
2019-04-19 |
|
perl-pod-checker
|
public |
No Summary
|
2019-04-19 |
|
metaquantome
|
public |
Quantitative metaproteomics analysis of taxonomy and function.
|
2019-04-19 |
|
perl-hpc-runner-command-plugin-logger-sqlite
|
public |
No Summary
|
2019-04-19 |
|
perl-hpc-runner-command
|
public |
Create composable bioinformatics hpc analyses.
|
2019-04-19 |
|
perl-archive-tar-wrapper
|
public |
API wrapper around the 'tar' utility
|
2019-04-19 |
|
perl-biosails
|
public |
Standard(ized) Analysis Information Layers
|
2019-04-19 |
|
perl-dumbbench
|
public |
More reliable benchmarking with the least amount of thinking
|
2019-04-19 |
|
perl-devel-checkos
|
public |
check what OS we're running on
|
2019-04-19 |
|
perl-moosex-object-pluggable
|
public |
Make your classes pluggable
|
2019-04-19 |
|
perl-number-witherror
|
public |
Numbers with error propagation and scientific rounding
|
2019-04-19 |
|
perl-prefork
|
public |
Optimized module loading for forking or non-forking processes
|
2019-04-19 |
|
perl-statistics-caseresampling
|
public |
Efficient resampling and calculation of medians with confidence intervals
|
2019-04-19 |
|
perl-test-lectrotest
|
public |
Easy, automatic, specification-based tests
|
2019-04-19 |
|
perl-text-ansitable
|
public |
No Summary
|
2019-04-19 |
|
kronos
|
public |
Kronos is a highly flexible Python-based software tool that mainly enables bioinformatics developers, i.e. bioinformaticians who develop workflows for analyzing genomic data, to quickly make a workflow.
|
2019-04-19 |
|
ruffus
|
public |
Light-weight Python Computational Pipeline Management
|
2019-04-19 |
|
group_humann2_uniref_abundances_to_go
|
public |
Group abundances of UniRef50 gene families obtained with HUMAnN2 to Gene Ontology (GO) slim terms with relative abundances
|
2019-04-19 |
|
slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions
|
2019-04-19 |
|
deepac
|
public |
Predicting pathogenic potentials of novel DNA with reverse-complement neural networks.
|
2019-04-18 |
|
wgs2ncbi
|
public |
Toolkit for preparing genomes for submission to NCBI
|
2019-04-18 |
|
perl-version-next
|
public |
No Summary
|
2019-04-18 |
|
perl-moosex-app
|
public |
Write user-friendly command line apps with even less suffering
|
2019-04-18 |
|
perl-file-homedir
|
public |
Find your home and other directories on any platform
|
2019-04-18 |
|
perl-pod-elemental
|
public |
work with nestable Pod elements
|
2019-04-18 |
|
perl-mixin-linewise
|
public |
No Summary
|
2019-04-18 |
|
picard
|
public |
Java tools for working with NGS data in the BAM format
|
2019-04-18 |
|
digestiflow-cli
|
public |
Command line client for Digestiflow.
|
2019-04-18 |
|
hyphy
|
public |
HyPhy (Hypothesis Testing using Phylogenies) is an open-source software package for the analysis of genetic sequences
(in particular the inference of natural selection) using techniques in phylogenetics, molecular evolution, and machine learning.
|
2019-04-18 |
|
tango
|
public |
Assign taxonomy to metagenomic contigs
|
2019-04-18 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes
|
2019-04-18 |