bioconda / packages

Package Name Access Summary Updated
genblasta public genBlast is a program suite, consisting of two programs: genBlastA and genBlastG. genBlastA parses local alignments, or high-scoring segment pairs (HSPs) produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs. 2016-12-01
mreps public mreps is a flexible and efficient software for identifying serial repeats (usually called tandem repeats) in DNA sequences. 2016-12-01
ngs-sdk public NGS SDK Language Bindings 2016-12-01
toposort public A topological sort algorithm for Python. 2016-12-01
moreutils public a growing collection of the unix tools that nobody thought to write long ago when unix was young 2016-12-01
knot public Detection of knots in protein folds. 2016-12-01
pyomo public Pyomo: Python Optimization Modeling Objects 2016-12-01
test-glibc public Find which glibc version is used for building packages. 2016-12-01
mysql-connector-c public MySQL Connector/C, the C interface for communicating with MySQL servers. 2016-12-01
pyutilib public PyUtilib: A collection of Python utilities 2016-12-01
hall-lab-svtools public Tools for processing and analyzing structural variants. 2016-12-01
libdb public The Berkeley DB embedded database system. 2016-12-01
awscli public Universal Command Line Environment for AWS 2016-12-01
ansible public Radically simple IT automation 2016-12-01
ghc public GHC is a state-of-the-art, open source, compiler and interactive environment for the functional language Haskell. 2016-12-01
ms public Generates random independent samples according to a simple Wright-Fisher neutral model. 2016-12-01
hubward public Manage the visualization of large amounts of other people's [often messy] genomics data 2016-12-01
oligotyping public The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons 2016-12-01
bio-vcf public Smart VCF parser 2016-12-01
arvados-cli public Command line interface to Arvados, a free and open source platform for big data science 2016-12-01
phonenumbers public Python version of Google's common library for parsing, formatting, storing and validating international phone numbers. 2016-12-01
perl-sanger-allelecount public Support code for NGS copy number algorithm 2016-12-01
perl-bio-db-sam public Read SAM/BAM database files 2016-12-01
perl-pcap public NGS reference implementations and helper code for the IGCG/TCGA Pan-Cancer Analysis Project 2016-12-01
glpk public The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. 2016-12-01
kraken-all public This metapackage installs kraken with optional dependency jellyfish for building kraken databases. 2016-12-01
sqlitebrowser public DB Browser for SQLite is a high quality, visual, open source tool to create, design, and edit database files compatible with SQLite. 2016-12-01
nasm public NASM, the Netwide Assembler. 2016-12-01
wkhtmltopdf public wkhtmltopdf and wkhtmltoimage are open source (LGPLv3) command line tools to render HTML into PDF and various image formats using the Qt WebKit rendering engine 2016-12-01
chanjo public Coverage analysis tool for clinical sequencing 2016-12-01
genometools public GenomeTools: Scripts and Classes For Working With Genomic Data. 2016-12-01
r-magrittr public Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, "Ceci n'est pas un pipe." 2016-12-01
google-api-python-client public No Summary 2016-12-01
avro public Avro is a serialization and RPC framework. 2016-12-01
denovogear public A program to detect denovo-variants using next-generation sequencing data. 2016-12-01
google-sparsehash public Several hash-map implementations. 2016-12-01
r-jpeg public This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors. 2016-12-01
lapack public Linear Algebra PACKage 2016-12-01
r-tximport public Import and summarize transcript-level estimates for gene-level analysis 2016-12-01
eigen public Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. 2016-12-01
libsvm public LIBSVM is an integrated software for support vector classification, (C-SVC,nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation(one-class SVM). It supports multi-class classification. 2016-12-01
gdal public Geospatial Data Abstraction Library 2016-12-01
plink2 public Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. 2016-12-01
jq public jq is a lightweight and flexible command-line JSON processor. 2016-12-01
intervalstats public Tool for assessing similarity between sets of intervals 2016-12-01
datamash public GNU Datamash is a command-line program which performs basic numeric,textual and statistical operations on input textual data files. 2016-12-01
perl-hpc-runner-mce public Job submission using MCE 2016-12-01
scikit-allel public A Python package for exploring and analysing genetic variation data. 2016-12-01
perl-biox-workflow public A very opinionated template based workflow writer. 2016-12-01
rdkit public Open-Source Cheminformatics Software 2016-12-01
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