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hail
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public |
Hail is Python-based data analysis tool for working with genomic data.
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2025-08-20 |
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jvarkit-bamstats04
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public |
Coverage statistics for a BED file.
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2025-08-20 |
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macsylib
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public |
MacSyLib: Python library that help to detect of macromolecular, systems genetic pathways… in prokaryotes protein datasets using systems modelling and similarity search.
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2025-08-20 |
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hi-corrector
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public |
Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC
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2025-08-20 |
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ushuffle
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public |
uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts
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2025-08-20 |
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perl-bio-procedural
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public |
Simple low-dependency procedural interfaces to BioPerl
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2025-08-20 |
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gargammel
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public |
Tool for simulating ancient DNA datasets.
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2025-08-19 |
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samblaster
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public |
Mark duplicates in and extract discordant and split reads from SAM files.
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2025-08-19 |
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perl-inline-c
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public |
C Language Support for Inline.
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2025-08-19 |
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lumpy-sv-minimal
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public |
A general probabilistic framework for structural variant discovery. This package contains only the lumpy executable
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2025-08-19 |
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dxpy
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public |
DNAnexus Platform API bindings for Python
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2025-08-19 |
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nanoplot
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public |
Plotting suite for long read sequencing data and alignments.
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2025-08-19 |
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medaka
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public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
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2025-08-19 |
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fastq-tools
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public |
A collection of fastq manipulation scripts written in C for speed.
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2025-08-19 |
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reditools3
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public |
REDItools3 is an RNA editing detection tool implemented in Python3 for analyzing RNA-seq data.
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2025-08-19 |
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haplotaglr
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public |
Haplotagging individual long reads using known haplotype information.
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2025-08-19 |
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hisat2-pipeline
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public |
A pipeline to automatically run an RNA-seq analysis using HISAT2/Stringtie using default settings.
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2025-08-19 |
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ms2deepscore
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public |
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
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2025-08-19 |
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grzctl
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public |
Control CLI for GRZ administrators.
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2025-08-19 |
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grz-cli
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public |
Tool for validation, encryption and upload of MV submissions to GDCs.
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2025-08-19 |
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taxburst
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public |
sunburst plots for taxonomy
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2025-08-19 |
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snakemake-storage-plugin-irods
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public |
A Snakemake plugin for handling input and output on iRODS.
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2025-08-19 |
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grz-pydantic-models
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public |
Pydantic models for the GRZ metadata schema
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2025-08-19 |
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grz-db
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public |
SQL models for grz-cli and grz-watchdog
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2025-08-19 |
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grz-common
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public |
Common library for grz applications.
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2025-08-19 |
