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hits
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public |
Utilities for processing high-throughput sequencing experiments.
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2024-12-19 |
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bioconductor-cytodx
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public |
Robust prediction of clinical outcomes using cytometry data without cell gating
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2024-12-19 |
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bioconductor-reactomegsa.data
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public |
Companion data package for the ReactomeGSA package
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2024-12-19 |
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r-cp4p
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public |
Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
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2024-12-19 |
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bioconductor-affydata
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public |
Affymetrix Data for Demonstration Purpose
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2024-12-19 |
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r-mutoss
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public |
Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'.
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2024-12-19 |
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bioconductor-abarray
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public |
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
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2024-12-19 |
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bioconductor-fedup
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public |
Fisher's Test for Enrichment and Depletion of User-Defined Pathways
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2024-12-19 |
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haproh
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public |
Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel
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2024-12-19 |
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bioconductor-rain
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public |
Rhythmicity Analysis Incorporating Non-parametric Methods
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2024-12-19 |
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bioconductor-paircompviz
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public |
Multiple comparison test visualization
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2024-12-19 |
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bioconductor-dstruct
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public |
Identifying differentially reactive regions from RNA structurome profiling data
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2024-12-19 |
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python-bioext
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public |
A few handy bioinformatics tools not already in BioPython
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2024-12-19 |
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bioconductor-biocviews
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public |
Categorized views of R package repositories
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2024-12-19 |
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bioconductor-a4classif
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public |
Automated Affymetrix Array Analysis Classification Package
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2024-12-19 |
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bioconductor-stategra
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public |
Classes and methods for multi-omics data integration
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2024-12-19 |
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bioconductor-aracne.networks
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public |
ARACNe-inferred gene networks from TCGA tumor datasets
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2024-12-19 |
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bioconductor-curatedbladderdata
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public |
Bladder Cancer Gene Expression Analysis
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2024-12-19 |
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bioconductor-cghcall
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public |
Calling aberrations for array CGH tumor profiles.
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2024-12-19 |
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bioconductor-cycle
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public |
Significance of periodic expression pattern in time-series data
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2024-12-19 |
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bioconductor-flowclean
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public |
flowClean
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2024-12-18 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2024-12-18 |
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bioconductor-simat
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public |
GC-SIM-MS data processing and alaysis tool
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2024-12-18 |
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bioconductor-flowmeans
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public |
Non-parametric Flow Cytometry Data Gating
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2024-12-18 |
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bioconductor-chimphumanbraindata
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public |
Chimp and human brain data package
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2024-12-18 |
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bioconductor-consensusclusterplus
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public |
ConsensusClusterPlus
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2024-12-18 |
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disco
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public |
Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
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2024-12-18 |
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bioconductor-diggitdata
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public |
Example data for the diggit package
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2024-12-18 |
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arcs
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public |
Scaffolding genome sequence assemblies using linked or long reads
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2024-12-18 |
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bioconductor-tronco
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public |
TRONCO, an R package for TRanslational ONCOlogy
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2024-12-18 |
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bioconductor-dorothea
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public |
Collection Of Human And Mouse TF Regulons
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2024-12-18 |
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bioconductor-flowbeads
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public |
flowBeads: Analysis of flow bead data
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2024-12-18 |
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bioconductor-rcellminer
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public |
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
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2024-12-18 |
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anchorwave
|
public |
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication variation
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2024-12-18 |
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r-mspbwt
|
public |
Multi Symbol Positional Burrows Wheeler Transform
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2024-12-18 |
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r-diffcorr
|
public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
|
2024-12-18 |
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bioconductor-cll
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public |
A Package for CLL Gene Expression Data
|
2024-12-18 |
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bioconductor-rcwl
|
public |
An R interface to the Common Workflow Language
|
2024-12-18 |
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bioconductor-metabomxtr
|
public |
A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
|
2024-12-18 |
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r-tidygenomics
|
public |
Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.
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2024-12-18 |
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insurveyor
|
public |
An insertion caller for Illumina paired-end WGS data.
|
2024-12-18 |
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r-velocyto.r
|
public |
RNA velocity estimation in R
|
2024-12-18 |
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bioconductor-dirichletmultinomial
|
public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
|
2024-12-18 |
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bioconductor-rebook
|
public |
Re-using Content in Bioconductor Books
|
2024-12-18 |
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bioconductor-metaseq
|
public |
Meta-analysis of RNA-Seq count data in multiple studies
|
2024-12-18 |
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r-crmn
|
public |
Implements the Cross-contribution Compensating Multiple standard Normalization (CCMN) method described in Redestig et al. (2009) Analytical Chemistry <doi:10.1021/ac901143w> and other normalization algorithms.
|
2024-12-18 |
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bioconductor-flowspecs
|
public |
Tools for processing of high-dimensional cytometry data
|
2024-12-18 |
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ntstat
|
public |
a toolkit for statistical analysis of k-mer frequency and depth
|
2024-12-18 |
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bioconductor-ampaffyexample
|
public |
Example of Amplified Data
|
2024-12-18 |
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bioconductor-turbonorm
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public |
A fast scatterplot smoother suitable for microarray normalization
|
2024-12-18 |
