| Package Name | Access | Summary | Updated |
|---|---|---|---|
| gaas | public | Suite of tools related to Genome Assembly Annotation Service tasks at NBIS. | 2025-07-08 |
| exonerate | public | Exonerate - A generic tool for pairwise sequence comparison / alignment | 2025-07-08 |
| fwdpp | public | A C++ template library for forward-time population genetic simulation. | 2025-07-08 |
| nmslib-metabrainz | public | Non-Metric Space Library (NMSLIB). | 2025-07-07 |
| metasbt | public | Microbial genomes characterization with Sequence Bloom Trees. | 2025-07-07 |
| saffrontree | public | No Summary | 2025-07-07 |
| ncls | public | A fast interval tree-like implementation in C, wrapped for the Python ecosystem. Basically a static interval-tree that is silly fast for both construction and lookups. | 2025-07-07 |
| newmap | public | Tool for creating mappability data for reference sequences. | 2025-07-07 |
| sibeliaz | public | A fast whole-genome aligner based on de Bruijn graphs. | 2025-07-07 |
| ldblockshow | public | A tool for showing linkage disequilibrium heatmaps from variant call format (VCF) files. | 2025-07-07 |
| xengsort | public | A fast xenograft read sorter based on space-efficient k-mer hashing. | 2025-07-07 |
| wtv | public | A library and CLI for ion selection in mass spectrometry data. | 2025-07-07 |
| psosp | public | PSOSP (Prophage SOS-dependency Predictor) | 2025-07-07 |
| pathphynder | public | A workflow for ancient DNA placement into reference phylogenies. | 2025-07-07 |
| matchms | public | Python library for fuzzy comparison of mass spectrum data and other Python objects. | 2025-07-07 |
| chromhmm | public | ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. | 2025-07-07 |
| lassensus | public | Tool for creating Lassa virus consensus sequences | 2025-07-07 |
| tooldistillator | public | Tool to extract and aggregate information from different tool outputs to JSON parsable files | 2025-07-07 |
| perl-cgi | public | A generic file fetching mechanism. | 2025-07-07 |
| cram-archiver | public | A samtools wrapper for CRAM conversion automation. | 2025-07-07 |
| ovrlpy | public | A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data. | 2025-07-07 |
| ensembl-utils | public | Ensembl Python general-purpose utils | 2025-07-07 |
| ncbi-datasets-pyclient | public | NCBI Datasets API | 2025-07-07 |
| ervdetective | public | An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs). | 2025-07-07 |
| ls-gkm | public | gkm-SVM, a sequence-based method for predicting regulatory DNA elements. | 2025-07-03 |
