| Package Name | Access | Summary | Updated |
|---|---|---|---|
| savana | public | SAVANA: a somatic structural variant caller for long-read data. | 2025-09-22 |
| knotinframe | public | Predicts -1 frameshift sites with simple pseudoknots | 2025-09-22 |
| glimmerhmm | public | No Summary | 2025-09-22 |
| ipk | public | IPK is a tool for computing phylo-k-mers for a fixed phylogeny. | 2025-09-22 |
| relion | public | Image-processing software for cryo-electron microscopy. | 2025-09-22 |
| excludonfinder | public | A tool for identifying and analyzing excludons in genomic data using RNA-seq data. | 2025-09-22 |
| visceral-evaluatesegmentation | public | EvaluateSegmentation is a tool that compares two volumes (a test segmentation and a ground truth segmentation) using 22 different metrics that were selected as a result of a comprehensive research into the metrics used in the medical volume segmentations. | 2025-09-22 |
| pbiotools | public | Miscellaneous bioinformatics and other supporting utilities for Python 3. | 2025-09-22 |
| dbcan | public | Standalone version of dbCAN annotation tool for automated CAZyme annotation. | 2025-09-22 |
| spoa | public | SIMD partial order alignment tool/library. | 2025-09-22 |
| pcaone | public | PCAone - Principal Component Analysis All in One. | 2025-09-22 |
| epimetheus-py | public | Cli tool for fast lookup in pileup for motif methylation | 2025-09-22 |
| chromsize | public | just get your chrom sizes | 2025-09-22 |
| lrge | public | Genome size estimation from long read overlaps | 2025-09-22 |
| bigtools | public | Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files. | 2025-09-21 |
| survivor | public | Toolset for SV simulation, comparison and filtering | 2025-09-21 |
| decifer | public | DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF) | 2025-09-21 |
| expansionhunter | public | A tool for estimating repeat sizes | 2025-09-21 |
| vt | public | A tool set for short variant discovery in genetic sequence data | 2025-09-21 |
| stringdecomposer | public | A tool for decomposing of strings into a set of given monomers | 2025-09-21 |
| quatradis | public | A set of tools to analyse the output from TraDIS analyses | 2025-09-21 |
| albatradis | public | Comparative TraDIS analysis. | 2025-09-21 |
| gangstr | public | GangSTR is a tool for genome-wide profiling tandem repeats from short reads. | 2025-09-21 |
| espresso | public | ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data | 2025-09-21 |
| snakemake-executor-plugin-cannon | public | A Snakemake executor plugin for submitting jobs to the Cannon cluster at Harvard University. | 2025-09-21 |
