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piscem-infer
|
public |
piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data
|
2025-07-20 |
|
pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2025-07-19 |
|
bygul
|
public |
Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input.
|
2025-07-18 |
|
scispacy
|
public |
A full SpaCy pipeline and models for scientific/biomedical documents.
|
2025-07-18 |
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pyfastx
|
public |
pyfastx is a python module for fast random
access to sequences from plain and gzipped
FASTA/Q file
|
2025-07-18 |
|
pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2025-07-18 |
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pyhmmer
|
public |
Cython bindings and Python interface to HMMER3.
|
2025-07-18 |
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hal2vg
|
public |
A tool for converting from hal to vg format, as well as other tools generally useful for cactus.
|
2025-07-18 |
|
gb_taxonomy_tools
|
public |
These are four simple utilities which perform certain manipulations and visualization tasks on GenBank taxonomic information.
|
2025-07-18 |
|
d4binding
|
public |
The C/C++ binding for the D4 file format.
|
2025-07-18 |
|
metanovo
|
public |
Produce targeted databases for mass spectrometry analysis.
|
2025-07-18 |
|
ccp4srs
|
public |
CCP4 Storage, Retrieval and Search framework for small-molecule data
|
2025-07-18 |
|
pupmapper
|
public |
Tool & python package for calculating genome wide pileup mappability.
|
2025-07-18 |
|
r-erah
|
public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
|
2025-07-18 |
|
vcf-validator
|
public |
EBI EVA - Validation tool for VCF file format compliance
|
2025-07-18 |
|
mosdepth
|
public |
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
|
2025-07-18 |
|
bactopia-py
|
public |
A Python package for working with Bactopia.
|
2025-07-17 |
|
cenote-taker3
|
public |
Cenote-Taker 3: Discover and annotate the virome.
|
2025-07-17 |
|
bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
|
2025-07-17 |
|
bioconductor-rbowtie2
|
public |
An R Wrapper for Bowtie2 and AdapterRemoval
|
2025-07-17 |
|
minisplice
|
public |
minisplice is a command-line tool to estimate the odds-ratio score of canonical donor (GT) and acceptor (AG) splice sites. It is intended to be used with miniprot or minimap2 for improving alignment accuracy especially for distant homologs..
|
2025-07-17 |
|
minigraph
|
public |
Proof-of-concept seq-to-graph mapper and graph generator
|
2025-07-17 |
|
cdskit
|
public |
A toolkit for processing protein-coding sequences (CDS).
|
2025-07-17 |
|
isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-07-17 |
|
gcen
|
public |
GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
|
2025-07-17 |
