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snakemake-interface-report-plugins
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public |
This package provides a stable interface for interactions between Snakemake and its report plugins.
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2025-07-29 |
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snakemake-interface-executor-plugins
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public |
This package provides a stable interface for interactions between Snakemake and its executor plugins.
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2025-07-29 |
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wfmash
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public |
A pangenome-scale aligner.
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2025-07-29 |
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viroconstrictor
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public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
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2025-07-29 |
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nanoblaster
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public |
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
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2025-07-28 |
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bte
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public |
Cython wrapper enabling use of the MAT library in Python.
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2025-07-28 |
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sequana
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public |
A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis.
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2025-07-28 |
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superintervals
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public |
Rapid interval intersections.
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2025-07-28 |
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ensembl-py
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public |
Ensembl Python base library
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2025-07-28 |
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mupbwt
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public |
A light pbwt-based index
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2025-07-28 |
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diamond
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public |
Accelerated BLAST compatible local sequence aligner.
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2025-07-28 |
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hmftools-pave
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public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
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2025-07-28 |
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hmftools-cobalt
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public |
Calculate read-depth counts and GC ratios to use in PURPLE.
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2025-07-28 |
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hmftools-isofox
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public |
Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.
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2025-07-28 |
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readfq
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public |
A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version
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2025-07-28 |
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kmergenie
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public |
KmerGenie estimates the best k-mer length for genome de novo assembly
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2025-07-28 |
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ribotin
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public |
Ribosomal DNA assembly tool.
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2025-07-28 |
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maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
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2025-07-28 |
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mp-est
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public |
Maximum Pseudo-likelihood Estimation of Species Trees
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2025-07-28 |
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winnowmap
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public |
Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
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2025-07-28 |
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graphaligner
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public |
Sequence to graph aligner for long reads
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2025-07-27 |
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plass
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public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
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2025-07-27 |
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spacepharer
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public |
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
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2025-07-27 |
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alphafill
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public |
Transplant missing compounds to the AlphaFold models
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2025-07-27 |
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mrtrix3
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public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
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2025-07-27 |
