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winnowmap
|
public |
Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
|
2025-07-28 |
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graphaligner
|
public |
Sequence to graph aligner for long reads
|
2025-07-27 |
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plass
|
public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
|
2025-07-27 |
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spacepharer
|
public |
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
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2025-07-27 |
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alphafill
|
public |
Transplant missing compounds to the AlphaFold models
|
2025-07-27 |
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mrtrix3
|
public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
|
2025-07-27 |
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fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2025-07-27 |
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hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2025-07-27 |
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mmseqs2
|
public |
MMseqs2: ultra fast and sensitive sequence search and clustering suite
|
2025-07-27 |
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checkatlas
|
public |
One liner tool to check the quality of your single-cell atlases.
|
2025-07-26 |
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viloca
|
public |
VILOCA is a tool to analyse short- and long-read sequencing viral samples. It provides mutation calls and local haplotypes.
|
2025-07-25 |
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bandwagon
|
public |
Simulate DNA band patterns for gel migration experiments
|
2025-07-24 |
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met4j
|
public |
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks
|
2025-07-24 |
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metadmg
|
public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data.
|
2025-07-24 |
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echidna
|
public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
|
2025-07-24 |
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snakemake-interface-logger-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its logger plugins.
|
2025-07-24 |
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hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
|
2025-07-24 |
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ska2
|
public |
SKA (Split Kmer Analysis) version 2.
|
2025-07-24 |
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perl-dbd-sqlite
|
public |
Self Contained RDBMS in a DBI Driver
|
2025-07-24 |
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snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins.
|
2025-07-24 |
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gencore
|
public |
Generate consensus reads to reduce sequencing noises and remove duplications
|
2025-07-24 |
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genform
|
public |
Generation of molecular formulas by high-resolution MS and MS/MS data
|
2025-07-24 |
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mutscan
|
public |
Detect and visualize target mutations by scanning FastQ files directly.
|
2025-07-24 |
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rnashapes
|
public |
RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space.
|
2025-07-24 |
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perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO.
|
2025-07-24 |
