| Package Name | Access | Summary | Updated |
|---|---|---|---|
| estmapper | public | No Summary | 2025-10-03 |
| phipack | public | Simple, rapid, and statistically efficient test for recombination. | 2025-10-03 |
| wtdbg | public | Wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly | 2025-10-03 |
| nordic | public | NORDic: a Network-Oriented package for the Repurposing of Drugs | 2025-10-03 |
| genomescope2 | public | Reference-free profiling of polyploid genomes | 2025-10-03 |
| pkiss | public | RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots. | 2025-10-02 |
| crabs | public | Crabs (Creating Reference databases for Amplicon-Based Sequencing) is a program to download and curate reference databases for eDNA metabarcoding analyses. | 2025-10-02 |
| mgnify-pipelines-toolkit | public | Collection of scripts and tools for MGnify pipelines. | 2025-10-02 |
| feems | public | Fast Estimation of Effective Migration Surfaces. | 2025-10-02 |
| r-rubic | public | No Summary | 2025-10-02 |
| isoquant | public | IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery. | 2025-10-02 |
| nanomotif | public | Identifying methlyation motifs in nanopore data. | 2025-10-02 |
| t-coffee | public | A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence. | 2025-10-02 |
| gimmemotifs | public | Motif prediction pipeline and various motif-related tools. | 2025-10-02 |
| gimmemotifs-minimal | public | Motif prediction pipeline and various motif-related tools. | 2025-10-02 |
| msaprobs | public | MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. | 2025-10-02 |
| secedo | public | SNV-based clustering for single-cell sequencing data | 2025-10-02 |
| shovill | public | Microbial assembly pipeline for Illumina paired-end reads | 2025-10-02 |
| cell2cell | public | Inferring cell-cell interactions from transcriptomes with cell2cell. | 2025-10-02 |
| rnaredprint | public | Tree-decomposition based dynamic programming algorithm for multiple target RNA design | 2025-10-02 |
| linearfold | public | Linear-Time Prediction for RNA Secondary Structures | 2025-10-02 |
| eternafold | public | RNA structure prediction algorithm improved through crowdsourced training data | 2025-10-02 |
| orthanq | public | Uncertainty aware HLA typing and general haplotype quantification. | 2025-10-02 |
| scallop | public | Scallop is a reference-based transcriptome assembler for RNA-seq | 2025-10-02 |
| seqsero2 | public | Salmonella serotype prediction from genome sequencing data. | 2025-10-02 |
