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graphembed
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public |
Efficient and Robust Graph/Network Embedding via High-Order Proximity Preservation or Recursive Sketching.
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2025-08-08 |
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pgap2
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public |
PGAP2: a comprehensive pan-genome analysis pipeline for prokaryotic genomes.
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2025-08-08 |
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phyclone
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public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
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2025-08-08 |
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cpstools
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public |
CPStools is a package for analyzing chloroplast genome sequences.
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2025-08-08 |
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sourmash
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public |
Quickly search, compare, and analyze genomic and metagenomic data sets.
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2025-08-07 |
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gotohscan
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public |
A search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments.
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2025-08-07 |
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structure-threader
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public |
A program to parallelize runs of 'Structure', 'fastStructure' and 'MavericK'.
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2025-08-07 |
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gtotree
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public |
GToTree is a user-friendly workflow for phylogenomics.
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2025-08-06 |
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bismark
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public |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.
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2025-08-06 |
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fastga
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public |
FastGA - A Fast Genome Aligner.
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2025-08-06 |
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bamdash
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public |
Aggregate pathogen NGS results into an interactive plot.
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2025-08-06 |
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biobb_gromacs
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public |
biobb_gromacs is the Biobb module collection to perform molecular dynamics simulations using the GROMACS MD suite.
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2025-08-06 |
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phold
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public |
Phage annotation using protein structures
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2025-08-06 |
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prosampler
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public |
An ultra-fast motif finding program in large ChIP-seq datasets.
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2025-08-06 |
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flams
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public |
Find Lysine Acylation & other Modification Sites
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2025-08-06 |
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dinamo
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public |
An exact and efficient method for IUPAC motif discovery in DNA sequences
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2025-08-06 |
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razers3
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public |
RazerS 3 - Faster, fully sensitive read mapping
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2025-08-05 |
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rseg
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public |
The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.
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2025-08-05 |
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fastani
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public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
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2025-08-05 |
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mash
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public |
Fast sequence distance estimator that uses MinHash
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2025-08-05 |
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sincei
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public |
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
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2025-08-05 |
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isoquant
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public |
IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery.
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2025-08-05 |
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esme_pnetcdf_mvapich_4_0
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public |
PnetCDF - Parallel netCDF
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2025-08-05 |
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esme_netcdf-c_mvapich_4_0
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public |
NetCDF-C - netCDF interface for C
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2025-08-05 |
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esme_mvapich_4_0
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public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
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2025-08-05 |
