|
icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
|
2025-01-21 |
|
sra-tools
|
public |
The SRA Toolkit and SDK from NCBI.
|
2025-01-21 |
|
tiddit
|
public |
TIDDIT - structural variant calling.
|
2025-01-21 |
|
py2bit
|
public |
A package for accessing 2bit files using lib2bit
|
2025-01-21 |
|
emu
|
public |
Emu is a relative abundance estimator for 16s genomic data.
|
2025-01-21 |
|
ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2025-01-21 |
|
crocodeel
|
public |
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
|
2025-01-21 |
|
ms2pip
|
public |
MS²PIP: MS² Peak Intensity Prediction
|
2025-01-21 |
|
virusrecom
|
public |
An information-theory-based method for recombination detection of viral lineages.
|
2025-01-21 |
|
kbo-cli
|
public |
Command-line interface for the kbo local aligner
|
2025-01-21 |
|
biobb_amber
|
public |
Biobb_amber is a BioBB category for AMBER MD package.
|
2025-01-21 |
|
ebi-eva-common-pyutils
|
public |
EBI EVA - Common Python Utilities
|
2025-01-21 |
|
biobb_haddock
|
public |
biobb_haddock is the Biobb module collection to compute information-driven flexible protein-protein docking.
|
2025-01-21 |
|
staden_io_lib
|
public |
Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM
|
2025-01-21 |
|
grepq
|
public |
Quickly filter FASTQ files
|
2025-01-21 |
|
pyopenms
|
public |
python bindings for OpenMS, an open-source software C++ library for LC-MS data management and analyses
|
2025-01-21 |
|
haddock_biobb
|
public |
HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project.
|
2025-01-21 |
|
linkedsv
|
public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
|
2025-01-21 |
|
kegg-pathways-completeness
|
public |
The tool counts completeness of each KEGG pathway for protein sequences.
|
2025-01-21 |
|
psm-utils
|
public |
Common utilities for parsing and handling peptide-spectrum matches and search engine results.
|
2025-01-21 |
|
calisp
|
public |
Estimate isotopic composition of peptides from proteomics mass spectrometry data.
|
2025-01-21 |
|
psims
|
public |
Writers and controlled vocabulary manager for PSI-MS's mzML and mzIdentML standards
|
2025-01-21 |
|
pomoxis
|
public |
Assembly, consensensus, and analysis tools by ONT research
|
2025-01-21 |
|
igv
|
public |
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
data and annotations.
|
2025-01-21 |
|
pacini_typing
|
public |
YAML-based bacterial genotyping application
|
2025-01-21 |
|
nf-core
|
public |
Python package with helper tools for the nf-core community.
|
2025-01-21 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2025-01-21 |
|
vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2025-01-21 |
|
severus
|
public |
A tool for somatic structural variant calling using long reads
|
2025-01-21 |
|
neat
|
public |
Toolset for generating synthethic FASTQ, VCF and BAM files.
|
2025-01-21 |
|
hybracter
|
public |
An automated long-read first bacterial genome assembly pipeline.
|
2025-01-21 |
|
deeptools
|
public |
A set of user-friendly tools for normalization and visualzation of deep-sequencing data
|
2025-01-20 |
|
ms2rescore-rs
|
public |
Rust functionality for the MS²Rescore package
|
2025-01-20 |
|
foldseek
|
public |
Foldseek: fast and accurate protein structure search
|
2025-01-20 |
|
tissuumaps
|
public |
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images
|
2025-01-20 |
|
poseidon-trident
|
public |
A tool (trident) to work with modular genotype databases formatted using Poseidon.
|
2025-01-20 |
|
t-coffee
|
public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
|
2025-01-20 |
|
memopair
|
public |
A package for identifying methylated motif pairs
|
2025-01-20 |
|
ourotools
|
public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
|
2025-01-20 |
|
pharokka
|
public |
Fast Phage Annotation Program
|
2025-01-20 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2025-01-19 |
|
seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab
|
2025-01-19 |
|
superintervals
|
public |
Rapid interval intersections
|
2025-01-18 |
|
mmseqs2
|
public |
MMseqs2: ultra fast and sensitive sequence search and clustering suite
|
2025-01-18 |
|
biobb_morph
|
public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
|
2025-01-18 |
|
gxf2bed
|
public |
Fastest GTF/GFF-to-BED converter chilling around
|
2025-01-18 |
|
wipertools
|
public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
|
2025-01-17 |
|
fasten
|
public |
Perform random operations on fastq files, using unix streaming. Secure your analysis with Fasten!
|
2025-01-17 |
|
trgt
|
public |
Tandem repeat genotyping and visualization from PacBio HiFi data
|
2025-01-17 |
|
pango-designation
|
public |
Repository for suggesting new lineages that should be added to the current scheme.
|
2025-01-17 |
