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steamboat
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public |
A collection of tools/scripts for microbial bioinformatics
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2025-08-11 |
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annembed
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public |
annembed is an ultra-fast and scalable non-linear dimension reduction/embedding algorithm (similar to UMAP or t-SNE) for large-scale biological data
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2025-08-11 |
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dnmtools
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public |
dnmtools is a set of tools for analyzing DNA methylation data from bisulfite sequencing.
|
2025-08-11 |
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stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-08-11 |
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teloscope
|
public |
A telomere annotation tools for genome assemblies.
|
2025-08-11 |
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spectral_hk
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public |
No Summary
|
2025-08-11 |
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seqan_tcoffee
|
public |
SeqAn::T-Coffee - Multiple Sequence Alignment
|
2025-08-11 |
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karect
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public |
Read error correction tool based on multiple alignment.
|
2025-08-10 |
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svmlight
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public |
SVMLight Library by Thorsten Joachim
|
2025-08-10 |
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gvcf2coverage
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public |
Coverage extractor from gVCF files.
|
2025-08-10 |
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kronik
|
public |
No Summary
|
2025-08-10 |
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megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-08-10 |
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psipred
|
public |
Protein Secondary Structure Predictor
|
2025-08-10 |
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proda
|
public |
ProDA - Multiple alignment of protein sequences with repeated and shuffled elements
|
2025-08-10 |
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gimmemotifs-minimal
|
public |
Motif prediction pipeline and various motif-related tools
|
2025-08-10 |
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gimmemotifs
|
public |
Motif prediction pipeline and various motif-related tools
|
2025-08-10 |
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pybigwig
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public |
A python extension written in C for quick access to bigWig files.
|
2025-08-10 |
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biofluff
|
public |
Exploratory analysis and visualization of high-throughput sequencing data
|
2025-08-10 |
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cloci
|
public |
Co-occurrence Locus and Orthologous Cluster Identifier.
|
2025-08-10 |
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ir
|
public |
Program for Calculating the Repetitiveness of DNA Sequences
|
2025-08-10 |
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jarvis
|
public |
Efficient lossless compression of genomic sequences
|
2025-08-10 |
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sts-smctc
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public |
A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms.
|
2025-08-10 |
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gtfsort
|
public |
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
|
2025-08-10 |
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kallisto
|
public |
Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
|
2025-08-10 |
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ucsc-paratestjob
|
public |
Version 12.18.
|
2025-08-10 |
