|
ntsynt
|
public |
Detecting multi-genome synteny blocks using minimizer graph mapping.
|
2025-08-14 |
|
ucsc-newpythonprog
|
public |
Make a skeleton for a new python program.
|
2025-08-14 |
|
haproh
|
public |
Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel
|
2025-08-14 |
|
panoct
|
public |
PanOCT, Pan-genome Ortholog Clustering Tool, is a program for pan-genomic analysis of closely related prokaryotic species or strains
|
2025-08-14 |
|
pairsnp
|
public |
pairsnp calculates pairwise SNP distance matrices from multiple sequence alignment fasta files.
|
2025-08-14 |
|
tbox-scan
|
public |
tbox-scan is for detecting and classifying T-boxes in DNA sequences.
|
2025-08-14 |
|
lightassembler
|
public |
Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.
|
2025-08-14 |
|
libstatgen
|
public |
Useful set of classes for creating statistical genetic programs.
|
2025-08-14 |
|
longgf
|
public |
A fast tool to detect gene fusion from long-read RNA-seq data.
|
2025-08-14 |
|
checkm-genome
|
public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
|
2025-08-14 |
|
mapping-iterative-assembler
|
public |
Consensus calling or `reference assisted assembly`, chiefly of ancient mitochondria.
|
2025-08-14 |
|
magpurify
|
public |
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
|
2025-08-14 |
|
mapdia
|
public |
Performs essential data preprocessing, including novel retention time-based normalization method and a sequence of peptide/fragment selection steps, and more importantly, hierarchical model-based statistical significance analysis for multi-group comparisons under representative experimental designs.
|
2025-08-14 |
|
mea
|
public |
Mea was developed as part of the lab class "Bioinformatik von RNA- und Proteinstrukturen (Praktikum, Modul 10-202-2208)". The package predicts maximum expected accuracy (MEA) RNA secondary structures from dot plots of RNAs while correcting the score in dependence of base pair span. Furthermore, it provides tools to evaluate predictions and optimize parameters.
|
2025-08-14 |
|
livekraken
|
public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
|
2025-08-14 |
|
galaxy-files-full
|
public |
The Galaxy file sources framework and default plugins.
|
2025-08-14 |
|
galaxy-data
|
public |
The Galaxy models, datatype framework, and datatype implementations.
|
2025-08-14 |
|
galaxy-files
|
public |
The Galaxy file sources framework and default plugins.
|
2025-08-14 |
|
galaxy-job-execution
|
public |
Galaxy job execution runtime utilities.
|
2025-08-14 |
|
galaxy-schema
|
public |
The Galaxy API schema objects.
|
2025-08-14 |
|
galaxy-objectstore
|
public |
The Galaxy object store framework and default implementations.
|
2025-08-14 |
|
autocycler
|
public |
A tool for generating consensus long-read assemblies for bacterial genomes.
|
2025-08-13 |
|
pmultiqc
|
public |
Python package for quality control of proteomics datasets, based on multiqc package
|
2025-08-13 |
|
sigprofilerextractor
|
public |
Extracts mutational signatures from mutational catalogues.
|
2025-08-13 |
|
cuna
|
public |
CUNA: Cytosine Uracil Neural Algorithm for ancient DNA damage detection using nanopore signals.
|
2025-08-13 |
