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trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2025-09-18 |
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pcasuite
|
public |
PCAzip compresses a trajectory, recentering the snapshots using a standard RMS or a gaussian version.
|
2025-09-18 |
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stripepy-hic
|
public |
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
|
2025-09-18 |
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influx_si
|
public |
Metabolic flux and concentration estimation based on stable isotope labeling
|
2025-09-18 |
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magneto
|
public |
MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data.
|
2025-09-18 |
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crispritz
|
public |
CRISPRitz, tool package for CRISPR experiments assessment and analysis.
|
2025-09-17 |
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strvctvre
|
public |
StrVCTVRE, a structural variant classifier for exonic deletions and duplications
|
2025-09-17 |
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vcfdist
|
public |
vcfdist: benchmarking phased germline variant calls in VCF format.
|
2025-09-17 |
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snap-aligner
|
public |
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
|
2025-09-17 |
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camlhmp
|
public |
Classification through yAML Heuristic Mapping Protocol.
|
2025-09-17 |
|
usher
|
public |
Ultrafast Sample Placement on Existing Trees (UShER).
|
2025-09-17 |
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dsrc
|
public |
high-performance compression of sequencing reads stored in FASTQ format
|
2025-09-16 |
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bamutil
|
public |
Programs that perform operations on SAM/BAM files, all built into a single executable, bam.
|
2025-09-16 |
|
tpmcalculator
|
public |
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.
|
2025-09-16 |
|
ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2025-09-16 |
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nonpareil
|
public |
Estimate average coverage and create curves for metagenomic datasets
|
2025-09-16 |
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idba
|
public |
IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.
|
2025-09-16 |
|
advntr
|
public |
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
|
2025-09-16 |
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zerone
|
public |
Zerone discretizes several ChIP-seq replicates simultaneously and resolves conflicts between them.
|
2025-09-16 |
|
yass
|
public |
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format.
|
2025-09-16 |
|
10x_bamtofastq
|
public |
Tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA,
and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis
|
2025-09-16 |
|
enhjoerning
|
public |
A tool for computing statistics on short read alignments.
|
2025-09-16 |
|
samshee
|
public |
A schema-agnostic parser and writer for illumina sample sheets v2.
|
2025-09-16 |
|
clincnv
|
public |
Copy number variation detection for clinical sequencing.
|
2025-09-16 |
|
mpralib
|
public |
Library to analyze count data of MPRA experiments.
|
2025-09-16 |
