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wakhan
|
public |
A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads
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2025-03-19 |
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pytrf
|
public |
a fast Python package for finding tandem repeat sequences
|
2025-03-19 |
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fusion-report
|
public |
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline
|
2025-03-19 |
|
bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
|
2025-03-19 |
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repeatmasker
|
public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
|
2025-03-19 |
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bioconductor-flowworkspace
|
public |
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
|
2025-03-19 |
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ngs-bits
|
public |
Short-read sequencing tools
|
2025-03-19 |
|
npstructures
|
public |
Simple data structures that augments the numpy library
|
2025-03-19 |
|
bioconductor-cellnoptr
|
public |
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
|
2025-03-19 |
|
bioconductor-rgadem
|
public |
de novo motif discovery
|
2025-03-19 |
|
bioconductor-rbowtie
|
public |
R bowtie wrapper
|
2025-03-19 |
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bioconductor-deepsnv
|
public |
Detection of subclonal SNVs in deep sequencing data.
|
2025-03-19 |
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bioconductor-aseb
|
public |
Predict Acetylated Lysine Sites
|
2025-03-19 |
|
bioconductor-beaddatapackr
|
public |
Compression of Illumina BeadArray data
|
2025-03-19 |
|
bioconductor-tweedeseq
|
public |
RNA-seq data analysis using the Poisson-Tweedie family of distributions
|
2025-03-19 |
|
pisad
|
public |
pisad - Phsaed Intraspecies Sample Anomalies Detection tool
|
2025-03-19 |
|
ncbi-vdb-py
|
public |
SRA tools database engine (Python bindings).
|
2025-03-19 |
|
captus
|
public |
Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
|
2025-03-19 |
|
sphae
|
public |
Phage toolkit
|
2025-03-19 |
|
polap
|
public |
POLAP: plant organelle long-read assembly pipeline
|
2025-03-19 |
|
bioconductor-mspurity
|
public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
|
2025-03-19 |
|
bioconductor-cn.mops
|
public |
cn.mops - Mixture of Poissons for CNV detection in NGS data
|
2025-03-19 |
|
bioconductor-titancna
|
public |
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
|
2025-03-19 |
|
bioconductor-oligo
|
public |
Preprocessing tools for oligonucleotide arrays
|
2025-03-19 |
|
bioconductor-ncdfflow
|
public |
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
|
2025-03-19 |
|
bioconductor-rots
|
public |
Reproducibility-Optimized Test Statistic
|
2025-03-19 |
|
bioconductor-mosaics
|
public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
|
2025-03-19 |
|
bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2025-03-19 |
|
bioconductor-bacon
|
public |
Controlling bias and inflation in association studies using the empirical null distribution
|
2025-03-19 |
|
starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
|
2025-03-19 |
|
gb-io
|
public |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
|
2025-03-19 |
|
ncbi-vdb
|
public |
SRA tools database engine.
|
2025-03-19 |
|
r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-03-19 |
|
muat
|
public |
A package for Mutation Attention Tool
|
2025-03-19 |
|
perl-html-tidy
|
public |
(X)HTML validation in a Perl object
|
2025-03-19 |
|
tidyp
|
public |
Program for cleaning up and validating HTML
|
2025-03-19 |
|
pango-designation
|
public |
Repository for suggesting new lineages that should be added to the current scheme.
|
2025-03-19 |
|
deacon
|
public |
Fast alignment-free sequence filter
|
2025-03-19 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-03-19 |
|
pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-03-18 |
|
hifiasm
|
public |
Haplotype-resolved assembler for accurate Hifi reads.
|
2025-03-18 |
|
seqnado
|
public |
Pipelines for genomics analysis
|
2025-03-18 |
|
mysterymaster
|
public |
Graphical Oxford Nanopore read demultiplexer
|
2025-03-18 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-03-18 |
|
bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2025-03-18 |
|
maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2025-03-18 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2025-03-18 |
|
gencube
|
public |
GenCube enables researchers to search for, download, retrieve metadata, and unify genome assemblies and diverse types of annotations for sequencing-based experimental data.
|
2025-03-18 |
|
vcf_parser
|
public |
Small library for parsing vcf files.
|
2025-03-18 |
|
immuneml
|
public |
immuneML is a software platform for machine learning analysis of immune receptor repertoires.
|
2025-03-18 |
