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pisad
|
public |
pisad - Phsaed Intraspecies Sample Anomalies Detection tool
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2025-03-19 |
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ncbi-vdb-py
|
public |
SRA tools database engine (Python bindings).
|
2025-03-19 |
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captus
|
public |
Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
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2025-03-19 |
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sphae
|
public |
Phage toolkit
|
2025-03-19 |
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polap
|
public |
POLAP: plant organelle long-read assembly pipeline
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2025-03-19 |
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bioconductor-mspurity
|
public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2025-03-19 |
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bioconductor-cn.mops
|
public |
cn.mops - Mixture of Poissons for CNV detection in NGS data
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2025-03-19 |
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bioconductor-titancna
|
public |
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
|
2025-03-19 |
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bioconductor-oligo
|
public |
Preprocessing tools for oligonucleotide arrays
|
2025-03-19 |
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bioconductor-ncdfflow
|
public |
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
|
2025-03-19 |
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bioconductor-rots
|
public |
Reproducibility-Optimized Test Statistic
|
2025-03-19 |
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bioconductor-mosaics
|
public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
|
2025-03-19 |
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bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2025-03-19 |
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bioconductor-bacon
|
public |
Controlling bias and inflation in association studies using the empirical null distribution
|
2025-03-19 |
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starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
|
2025-03-19 |
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gb-io
|
public |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
|
2025-03-19 |
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ncbi-vdb
|
public |
SRA tools database engine.
|
2025-03-19 |
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r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-03-19 |
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muat
|
public |
A package for Mutation Attention Tool
|
2025-03-19 |
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perl-html-tidy
|
public |
(X)HTML validation in a Perl object
|
2025-03-19 |
|
tidyp
|
public |
Program for cleaning up and validating HTML
|
2025-03-19 |
|
pango-designation
|
public |
Repository for suggesting new lineages that should be added to the current scheme.
|
2025-03-19 |
|
deacon
|
public |
Fast alignment-free sequence filter
|
2025-03-19 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-03-19 |
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pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-03-18 |
|
hifiasm
|
public |
Haplotype-resolved assembler for accurate Hifi reads.
|
2025-03-18 |
|
seqnado
|
public |
Pipelines for genomics analysis
|
2025-03-18 |
|
mysterymaster
|
public |
Graphical Oxford Nanopore read demultiplexer
|
2025-03-18 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-03-18 |
|
bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2025-03-18 |
|
maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2025-03-18 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2025-03-18 |
|
gencube
|
public |
GenCube enables researchers to search for, download, retrieve metadata, and unify genome assemblies and diverse types of annotations for sequencing-based experimental data.
|
2025-03-18 |
|
vcf_parser
|
public |
Small library for parsing vcf files.
|
2025-03-18 |
|
immuneml
|
public |
immuneML is a software platform for machine learning analysis of immune receptor repertoires.
|
2025-03-18 |
|
autobigs-cli
|
public |
A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-03-18 |
|
gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2025-03-18 |
|
plink
|
public |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
2025-03-18 |
|
commec
|
public |
commec: a free, open-source, globally available tool for DNA sequence screening
|
2025-03-18 |
|
bamread
|
public |
Read bam files quickly into dataframes in Python
|
2025-03-18 |
|
pyrle
|
public |
Genomic Rle-objects for Python
|
2025-03-18 |
|
snakemake-executor-plugin-aws-batch
|
public |
A Snakemake executor plugin for submitting jobs to AWS Batch.
|
2025-03-18 |
|
snakemake-interface-storage-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its storage plugins.
|
2025-03-18 |
|
hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2025-03-18 |
|
dajin2
|
public |
One-step genotyping tools for targeted long-read sequencing
|
2025-03-18 |
|
pybiolib
|
public |
BioLib Python Client
|
2025-03-18 |
|
orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification.
|
2025-03-18 |
|
neofox
|
public |
Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descriptors
|
2025-03-18 |
|
influx_si
|
public |
Metabolic flux and concentration estimation based on stable isotope labeling
|
2025-03-18 |
|
gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2025-03-18 |
