| Package Name | Access | Summary | Updated |
|---|---|---|---|
| python-msgpack | public | It's like JSON. But fast and small. | 2025-10-08 |
| quickmirseq | public | A pipeline for fast and accurate quantification of both known miRNAs and isomiRs by joint processing multiple samples | 2025-10-08 |
| mehari | public | VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust. | 2025-10-08 |
| funannotate | public | funannotate: eukaryotic genome annotation pipeline | 2025-10-08 |
| deconveil | public | An extension of PyDESeq2/DESeq2 designed to account for genome aneuploidy. | 2025-10-08 |
| flexynesis | public | A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. | 2025-10-08 |
| atol-qc-raw-ont | public | Run read QC on ONT reads. | 2025-10-08 |
| atol-qc-raw-shortread | public | Run short read QC on Hi-C or other Illumina reads. | 2025-10-08 |
| fastoma | public | FastOMA - a package to infer orthology information among proteomes. | 2025-10-08 |
| cogent3 | public | COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. | 2025-10-08 |
| cenote-taker3 | public | Cenote-Taker 3: Discover and annotate the virome. | 2025-10-08 |
| sigprofilerassignment | public | SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations | 2025-10-08 |
| genome-uploader | public | Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). | 2025-10-08 |
| ezcharts | public | eCharts plotting API. | 2025-10-08 |
| truvari | public | Structural variant comparison tool for VCFs. | 2025-10-08 |
| deacon | public | Fast alignment-free sequence filter | 2025-10-08 |
| suchtree | public | A python library for doing fast, thread-safe computations on phylogenetic trees | 2025-10-08 |
| twilight | public | TWILIGHT: A high throughput tool for tall and wide multiple sequence alignment. | 2025-10-08 |
| nomadic | public | Mobile sequencing and analysis in real-time | 2025-10-08 |
| baitfisher | public | No Summary | 2025-10-08 |
| alcor | public | Software for alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data. | 2025-10-08 |
| akt | public | Ancestry and Kinship Tools (AKT) | 2025-10-08 |
| allegro | public | A fast linkage and haplotype analysis utility making use of MTBDD to reduce complexity. | 2025-10-08 |
| bioconda-repodata-patches | public | Generate tweaks to index metadata, hosted separately from anaconda.org index. | 2025-10-08 |
| gvcfgenotyper | public | A utility for merging and genotyping Illumina-style GVCFs. | 2025-10-07 |
