| Package Name | Access | Summary | Updated |
|---|---|---|---|
| patchify | public | A library that helps you split image into small, overlappable patches, and merge patches back into the original image. | 2025-04-22 |
| tefinder | public | Programs for transposable element search and annotation in large eukaryotic genome sequence. | 2025-04-22 |
| snk | public | A Snakemake CLI and Workflow Management System. | 2025-04-22 |
| snk-cli | public | Dynamically generate CLIs from Snakemake configuration files | 2025-04-22 |
| mini3di | public | A NumPy port of the foldseek code for encoding protein structures to 3di. | 2025-04-22 |
| get_mnv | public | Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences. | 2025-04-22 |
| hmftools-peach | public | Infer haplotypes for interpretation in a pharmacogenomic context | 2025-04-22 |
| rukki | public | Extracting paths from assembly graphs. | 2025-04-22 |
| minimizers | public | Minimizers extraction from fasta files. | 2025-04-22 |
| dbghaplo | public | Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph. | 2025-04-22 |
| spreadgltools | public | Visualising pathogen dispersal in a high-performance browser application | 2025-04-22 |
| sizemeup | public | A simple tool to determine the genome size of an organism | 2025-04-22 |
| pgrc | public | A tool for compressing the DNA stream of FASTQ datasets. | 2025-04-22 |
| consensify | public | A method for generating a consensus pseudohaploid genome sequence | 2025-04-22 |
| moni | public | A Pangenomics Index for Finding MEMs | 2025-04-22 |
| mview | public | MView extracts and reformats the results of a sequence database search or multiple alignment. | 2025-04-22 |
| hsdecipher | public | Pipeline for the downstream analysis of highly similar duplicate genes | 2025-04-22 |
| hsdfinder | public | a tool to predict highly similar duplicates (HSDs) in eukaryotes | 2025-04-22 |
| msisensor-rna | public | MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data. | 2025-04-22 |
| busco_phylogenomics | public | Utility script to construct species phylogenies using BUSCO proteins. | 2025-04-22 |
| scarches | public | Transfer learning with Architecture Surgery on Single-cell data | 2025-04-22 |
| seq-hasher | public | Compute hash digests for DNA sequences in a FASTA file, with support for circular permutations | 2025-04-22 |
| tr-trimmer | public | Identify and trim terminal repeats from sequences in FASTA files | 2025-04-22 |
| hylight | public | Strain aware assembly of low coverage metagenomes. | 2025-04-22 |
| transanno | public | accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies | 2025-04-22 |
