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phylodm
|
public |
Efficient calculation of phylogenetic distance matrices.
|
2024-12-14 |
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python-hppy
|
public |
An intuitive HyPhy interface for Python
|
2024-12-14 |
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gargammel-slim
|
public |
Tool for simulating ancient DNA datasets
|
2024-12-14 |
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safesim
|
public |
SafeSeqS variant simulator
|
2024-12-14 |
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vphaser2
|
public |
V-Phaser 2 is a tool to call variants in genetically heterogeneous populations from ultra-deep sequence data
|
2024-12-14 |
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sga
|
public |
SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
|
2024-12-14 |
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telseq
|
public |
A software for calculating telomere length
|
2024-12-14 |
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tatajuba
|
public |
Identification and classification of homopolymeric tracts from reads
|
2024-12-14 |
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perl-namespace-autoclean
|
public |
Keep imports out of your namespace
|
2024-12-14 |
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perl-string-approx
|
public |
No Summary
|
2024-12-14 |
|
libgab
|
public |
Several C++ subroutines useful for bioinformatics
|
2024-12-14 |
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encode-blacklist
|
public |
The ENCODE Blacklist: Identification of Problematic Regions of the Genome
|
2024-12-14 |
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fann
|
public |
No Summary
|
2024-12-14 |
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fsa
|
public |
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based"
approach to aligning homologous protein, RNA or DNA sequences.
|
2024-12-14 |
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sracat
|
public |
a command-line tool for extracting unordered read data from SRA files
|
2024-12-14 |
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merfin
|
public |
Improved variant filtering and polishing via k-mer validation.
|
2024-12-14 |
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r-acidcli
|
public |
Interative R command line interface toolkit for Acid Genomics packages.
|
2024-12-14 |
|
mammal
|
public |
Accelerated Estimation of Frequency Classes in Site-heterogeneous Profile Mixture Models
|
2024-12-14 |
|
winnowmap
|
public |
Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
|
2024-12-14 |
|
fastqpuri
|
public |
fastq quality assessment and filtering tool
|
2024-12-14 |
|
bioawk
|
public |
BWK awk modified for biological data
|
2024-12-14 |
|
symbiontscreener
|
public |
Symbiont-Screener is a reference-free approach to identifying high-confidence host's long reads from symbionts and contaminants and overcoming the low sequencing accuracy according to a trio-based screening model.
|
2024-12-14 |
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ucsc-genepredhisto
|
public |
get data for generating histograms from a genePred file.
|
2024-12-14 |
|
rna-seqc
|
public |
Fast, efficient RNA-Seq metrics for quality control and process optimization.
|
2024-12-14 |
|
moni
|
public |
A Pangenomics Index for Finding MEMs
|
2024-12-14 |
|
modeltest-ng
|
public |
ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.
|
2024-12-14 |
|
genform
|
public |
Generation of molecular formulas by high-resolution MS and MS/MS data
|
2024-12-14 |
|
bicseq2-seg
|
public |
BICseq2-seg is for detecting CNVs based on the normalized data given by BICseq2-norm.
|
2024-12-14 |
|
ucsc-splitfilebycolumn
|
public |
Split text input into files named by column value
|
2024-12-14 |
|
phylocsfpp
|
public |
A fast and user-friendly implementation of PhyloCSF with annotation tools.
|
2024-12-14 |
|
pretextmap
|
public |
Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
|
2024-12-14 |
|
r-saige
|
public |
SAIGE is an R package with Scalable and Accurate Implementation of Generalized mixed model (Chen, H. et al. 2016)
|
2024-12-14 |
|
stringdecomposer
|
public |
A tool for decomposing of strings into a set of given monomers
|
2024-12-14 |
|
ucsc-axttomaf
|
public |
Convert from axt to maf format
|
2024-12-14 |
|
ucsc-coltransform
|
public |
Add and/or multiply column by constant.
|
2024-12-14 |
|
boms
|
public |
Cell Segmentation for Spatial Transcriptomics Data using BOMS
|
2024-12-14 |
|
illumina-interop
|
public |
The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores).
|
2024-12-14 |
|
shark
|
public |
Mapping-free filtering of useless RNA-Seq reads
|
2024-12-14 |
|
akt
|
public |
Ancestry and Kinship Tools (AKT)
|
2024-12-14 |
|
reads2graph
|
public |
reads2graph is an efficient tool for constructing edit-distance-based read graph from short-read sequencing data.
|
2024-12-14 |
|
dashing
|
public |
Fast and accurate genomic distances using HyperLogLog
|
2024-12-14 |
|
reseq
|
public |
ReSeq Illumina/BGI simulator
|
2024-12-14 |
|
ucsc-mafaddirows
|
public |
add 'i' rows to a maf
|
2024-12-14 |
|
zorro
|
public |
ZORRO is a probabilistic masking program that assigns confidence scores to each column in a multiple sequence alignment.
|
2024-12-14 |
|
libgtextutils
|
public |
No Summary
|
2024-12-14 |
|
coatran
|
public |
Coalescent tree simulation along a transmission network
|
2024-12-14 |
|
ucsc-maforder
|
public |
order components within a maf file
|
2024-12-14 |
|
maast
|
public |
Microbial agile accurate SNP Typer
|
2024-12-14 |
|
sciphi
|
public |
Single-cell mutation identification via phylogenetic inference
|
2024-12-14 |
|
r-cleangeostreamr
|
public |
Automatic curation of spatially annotated data.
|
2024-12-14 |
