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bioconductor-biodbncbi
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public |
biodbNcbi, a library for connecting to NCBI Databases.
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2024-12-16 |
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bioconductor-methped
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public |
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
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2024-12-16 |
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bioconductor-biodbnci
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public |
biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database
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2024-12-16 |
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bioconductor-biodbuniprot
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public |
biodbUniprot, a library for connecting to the Uniprot Database
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2024-12-16 |
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bioconductor-noiseq
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public |
Exploratory analysis and differential expression for RNA-seq data
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2024-12-16 |
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bioconductor-biodbhmdb
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public |
biodbHmdb, a library for connecting to the HMDB Database
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2024-12-16 |
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bioconductor-factdesign
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public |
Factorial designed microarray experiment analysis
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2024-12-16 |
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bioconductor-michip
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public |
MiChip Parsing and Summarizing Functions
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2024-12-16 |
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bioconductor-sigsquared
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public |
Gene signature generation for functionally validated signaling pathways
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2024-12-16 |
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bioconductor-masigpro
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public |
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
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2024-12-16 |
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bioconductor-qusage
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public |
qusage: Quantitative Set Analysis for Gene Expression
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2024-12-16 |
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emvc-2
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public |
An efficient SNV variant caller based on the expectation maximization algorithm.
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2024-12-16 |
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bioconductor-acme
|
public |
Algorithms for Calculating Microarray Enrichment (ACME)
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2024-12-16 |
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bioconductor-dyebias
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public |
The GASSCO method for correcting for slide-dependent gene-specific dye bias
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2024-12-16 |
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r-cdseq
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public |
Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>.
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2024-12-16 |
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bioconductor-cma
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public |
Synthesis of microarray-based classification
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2024-12-16 |
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bioconductor-readqpcr
|
public |
Read qPCR data
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2024-12-16 |
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bioconductor-help
|
public |
Tools for HELP data analysis
|
2024-12-16 |
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contatester
|
public |
Compute the Allelic Balance of a sample from a VCF file.
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2024-12-16 |
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bioconductor-anf
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public |
Affinity Network Fusion for Complex Patient Clustering
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2024-12-16 |
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bioconductor-clusterstab
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public |
Compute cluster stability scores for microarray data
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2024-12-16 |
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perl-sanger-cgp-vcf
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public |
a set of common perl utilities for generating consistent Vcf headers
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2024-12-16 |
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bioconductor-dfp
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public |
Gene Selection
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2024-12-16 |
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bioconductor-rtca
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public |
Open-source toolkit to analyse data from xCELLigence System (RTCA)
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2024-12-16 |
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bioconductor-cogena
|
public |
co-expressed gene-set enrichment analysis
|
2024-12-16 |
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bioconductor-ddct
|
public |
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
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2024-12-16 |
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srahunter
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public |
srahunter is a tool for processing SRA accession numbers.
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2024-12-16 |
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perl-bio-easel
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public |
Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline.
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2024-12-16 |
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locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
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2024-12-16 |
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bioconductor-undo
|
public |
Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions
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2024-12-16 |
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bioconductor-biobroom
|
public |
Turn Bioconductor objects into tidy data frames
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2024-12-16 |
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perl-inline-c
|
public |
C Language Support for Inline
|
2024-12-16 |
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perl-sub-attribute
|
public |
Reliable subroutine attribute handlers
|
2024-12-16 |
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bioconductor-piano
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public |
Platform for integrative analysis of omics data
|
2024-12-16 |
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perl-escape-houdini
|
public |
Perl API to Houdini, a zero-dependency C web escaping library
|
2024-12-16 |
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perl-config-autoconf
|
public |
A module to implement some of AutoConf macros in pure perl.
|
2024-12-16 |
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bioconductor-timecourse
|
public |
Statistical Analysis for Developmental Microarray Time Course Data
|
2024-12-16 |
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methyldackel
|
public |
A (mostly) universal methylation extractor for BS-seq experiments. Formerly named PileOMeth.
|
2024-12-16 |
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libsequence
|
public |
A C++ class library for evolutionary genetics.
|
2024-12-16 |
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meme
|
public |
Motif-based sequence analysis tools.
|
2024-12-16 |
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pycluster
|
public |
Clustering module for Python
|
2024-12-16 |
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pindel
|
public |
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
|
2024-12-16 |
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bioconductor-rnaseqcovarimpute
|
public |
Impute Covariate Data in RNA Sequencing Studies
|
2024-12-16 |
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bioconductor-cytolib
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public |
C++ infrastructure for representing and interacting with the gated cytometry data
|
2024-12-16 |
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perl-sanger-cgp-allelecount
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public |
Support code for NGS copy number algorithm
|
2024-12-16 |
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perl-datetime-locale
|
public |
Localization support for DateTime.pm
|
2024-12-16 |
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msisensor-pro
|
public |
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
2024-12-16 |
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alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2024-12-16 |
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trnascan-se
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public |
tRNA detection in large-scale genomic sequences
|
2024-12-16 |
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phispy
|
public |
Prophage finder using multiple metrics
|
2024-12-16 |
