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querynator
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public |
Python package to query cancer variant databases
|
2024-09-12 |
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sam2pairwise
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public |
sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read
|
2024-09-12 |
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graphtyper
|
public |
Population-scale genotyping using pangenome graphs
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2024-09-12 |
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f5c
|
public |
An optimised re-implementation of the call-methylation and eventalign modules in Nanopolish.
|
2024-09-12 |
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abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler
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2024-09-12 |
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geofetch
|
public |
Downloads data and metadata from GEO and SRA and creates standard PEPs.
|
2024-09-11 |
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callingcardstools
|
public |
An API and collection of cmd line tools to work with calling cards sequencing data
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2024-09-11 |
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gdc-client
|
public |
GDC Data Transfer Tool
|
2024-09-11 |
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tribal
|
public |
TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.
|
2024-09-11 |
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mgems
|
public |
mGEMS - sequencing data binning based on probabilistic classification
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2024-09-11 |
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msweep
|
public |
mSWEEP - bacterial community composition estimation from pseudoalignments
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2024-09-11 |
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schpl
|
public |
Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets
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2024-09-11 |
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mcl
|
public |
MCL - a cluster algorithm for graphs
|
2024-09-11 |
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bustools
|
public |
bustools is a program for manipulating BUS files for single cell RNA-Seq datasets.
|
2024-09-11 |
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diphase
|
public |
A diploid genome phasing tool
|
2024-09-11 |
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hybpiper
|
public |
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
|
2024-09-11 |
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hlafreq
|
public |
Download and combine HLA frequency data from multiple studies
|
2024-09-10 |
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ms2pip
|
public |
MS²PIP: MS² Peak Intensity Prediction
|
2024-09-10 |
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quota_anchor
|
public |
Strand and WGD aware syntenic gene identification
|
2024-09-10 |
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synapseclient
|
public |
Python client for Synapse
|
2024-09-10 |
|
moods
|
public |
MOODS: Motif Occurrence Detection Suite
|
2024-09-10 |
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ezcharts
|
public |
eCharts plotting API.
|
2024-09-10 |
|
toulligqc
|
public |
A post sequencing QC tool for Oxford Nanopore sequencers.
|
2024-09-10 |
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duplex-tools
|
public |
Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data.
|
2024-09-10 |
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pbstarphase
|
public |
A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
|
2024-09-10 |
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meteor
|
public |
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.
|
2024-09-10 |
|
shortstack
|
public |
ShortStack: Comprehensive annotation and quantification of small RNA genes
|
2024-09-10 |
|
xengsort
|
public |
A fast xenograft read sorter based on space-efficient k-mer hashing
|
2024-09-10 |
|
pod5
|
public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2024-09-10 |
|
wfa2-lib
|
public |
Wavefront alignment algorithm library v2
|
2024-09-10 |
|
sra-tools
|
public |
The SRA Toolkit and SDK from NCBI.
|
2024-09-10 |
|
freebayes
|
public |
Bayesian haplotype-based polymorphism discovery and genotyping
|
2024-09-10 |
|
mtnucratio
|
public |
A small tool to determine MT to Nuclear ratios for NGS data.
|
2024-09-10 |
|
vg
|
public |
Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
|
2024-09-10 |
|
ncbi-vdb
|
public |
SRA tools database engine
|
2024-09-10 |
|
quantms-utils
|
public |
Python package with scripts and helpers for the quantms workflow
|
2024-09-10 |
|
lib-pod5
|
public |
Python bindings for the POD5 file format.
|
2024-09-10 |
|
fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2024-09-10 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2024-09-10 |
|
perl-mce
|
public |
Many-Core Engine for Perl providing parallel processing capabilities
|
2024-09-10 |
|
perl-mce-shared
|
public |
MCE extension for sharing data supporting threads and processes
|
2024-09-10 |
|
mkdesigner
|
public |
Genome-wide design of markers for PCR-based genotyping from NGS data.
|
2024-09-10 |
|
telometer
|
public |
A simple regular expression based method for measuring individual, chromosome-specific telomere lengths from long-read sequencing data.
|
2024-09-09 |
|
mashpit
|
public |
Sketch-based surveillance platform
|
2024-09-09 |
|
seqchromloader
|
public |
Sequence and chromatin dataloader for deep learning
|
2024-09-09 |
|
scirpy
|
public |
A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.
|
2024-09-09 |
|
graphmap
|
public |
A highly sensitive and accurate mapper for long, error-prone reads
|
2024-09-09 |
|
seqwish
|
public |
Alignment to variation graph inducer
|
2024-09-09 |
|
truvari
|
public |
Structural variant comparison tool for VCFs
|
2024-09-09 |
|
eigensoft
|
public |
The EIGENSOFT package implements methods for analzing population structure and performing stratification correction
|
2024-09-09 |
