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bioconductor-genomictuples
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public |
Representation and Manipulation of Genomic Tuples
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2024-12-19 |
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bioconductor-tdbasedufe
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public |
Tensor Decomposition Based Unsupervised Feature Extraction
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2024-12-19 |
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bioconductor-seqarray
|
public |
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
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2024-12-19 |
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bioconductor-muscle
|
public |
Multiple Sequence Alignment with MUSCLE
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2024-12-19 |
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r-seqmagick
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public |
Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).
|
2024-12-19 |
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bioconductor-ncrnatools
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public |
An R toolkit for non-coding RNA
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2024-12-19 |
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bioconductor-genomautomorphism
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public |
Compute the automorphisms between DNA's Abelian group representations
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2024-12-19 |
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bioconductor-pipets
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public |
Poisson Identification of PEaks from Term-Seq data
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2024-12-19 |
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bioconductor-msbackendmassbank
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public |
Mass Spectrometry Data Backend for MassBank record Files
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2024-12-19 |
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bioconductor-generxcluster
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public |
gRx Differential Clustering
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2024-12-19 |
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bioconductor-microrna
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public |
Data and functions for dealing with microRNAs
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2024-12-19 |
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bioconductor-flowcut
|
public |
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
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2024-12-19 |
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bioconductor-idr2d
|
public |
Irreproducible Discovery Rate for Genomic Interactions Data
|
2024-12-19 |
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bioconductor-ramr
|
public |
Detection of Rare Aberrantly Methylated Regions in Array and NGS Data
|
2024-12-19 |
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bioconductor-altcdfenvs
|
public |
alternative CDF environments (aka probeset mappings)
|
2024-12-19 |
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bioconductor-megadepth
|
public |
megadepth: BigWig and BAM related utilities
|
2024-12-19 |
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bioconductor-bcseq
|
public |
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens
|
2024-12-19 |
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bioconductor-msbackendmgf
|
public |
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
|
2024-12-19 |
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ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-12-19 |
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bioconductor-selex
|
public |
Functions for analyzing SELEX-seq data
|
2024-12-19 |
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bioconductor-packfinder
|
public |
de novo Annotation of Pack-TYPE Transposable Elements
|
2024-12-19 |
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bioconductor-cindex
|
public |
Chromosome Instability Index
|
2024-12-19 |
|
bioconductor-dmrscan
|
public |
Detection of Differentially Methylated Regions
|
2024-12-19 |
|
bioconductor-brew3r.r
|
public |
R package associated to BREW3R
|
2024-12-19 |
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bioconductor-universalmotif
|
public |
Import, Modify, and Export Motifs with R
|
2024-12-19 |
|
bioconductor-gmrp
|
public |
GWAS-based Mendelian Randomization and Path Analyses
|
2024-12-19 |
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bioconductor-sscu
|
public |
Strength of Selected Codon Usage
|
2024-12-19 |
|
bioconductor-transite
|
public |
RNA-binding protein motif analysis
|
2024-12-19 |
|
bioconductor-meigor
|
public |
MEIGOR - MEtaheuristics for bIoinformatics Global Optimization
|
2024-12-19 |
|
bioconductor-qtlizer
|
public |
Comprehensive QTL annotation of GWAS results
|
2024-12-19 |
|
bioconductor-cordon
|
public |
Codon Usage Analysis and Prediction of Gene Expressivity
|
2024-12-19 |
|
bioconductor-scoup
|
public |
Simulate Codons with Darwinian Selection Modelled as an OU Process
|
2024-12-19 |
|
bioconductor-pqsfinder
|
public |
Identification of potential quadruplex forming sequences
|
2024-12-19 |
|
r-statvisual
|
public |
Visualization functions in the applications of translational medicine (TM) and biomarker (BM) development to compare groups by statistically visualizing data and/or results of analyses, such as visualizing data by displaying in one figure different groups' histograms, boxplots, densities, scatter plots, error-bar plots, or trajectory plots, by displaying scatter plots of top principal components or dendrograms with data points colored based on group information, or visualizing volcano plots to check the results of whole genome analyses for gene differential expression.
|
2024-12-19 |
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bioconductor-dnashaper
|
public |
High-throughput prediction of DNA shape features
|
2024-12-19 |
|
bioconductor-crisprbase
|
public |
Base functions and classes for CRISPR gRNA design
|
2024-12-19 |
|
bioconductor-lola
|
public |
Locus overlap analysis for enrichment of genomic ranges
|
2024-12-19 |
|
bioconductor-excluderanges
|
public |
Genomic coordinates of problematic genomic regions
|
2024-12-19 |
|
bioconductor-bcrank
|
public |
Predicting binding site consensus from ranked DNA sequences
|
2024-12-19 |
|
bioconductor-heatmaps
|
public |
Flexible Heatmaps for Functional Genomics and Sequence Features
|
2024-12-19 |
|
bioconductor-decipher
|
public |
Tools for curating, analyzing, and manipulating biological sequences
|
2024-12-19 |
|
bioconductor-cogeqc
|
public |
Systematic quality checks on comparative genomics analyses
|
2024-12-19 |
|
bioconductor-cnvmetrics
|
public |
Copy Number Variant Metrics
|
2024-12-19 |
|
bioconductor-biomartgogenesets
|
public |
Gene Ontology Gene Sets from BioMart
|
2024-12-19 |
|
bioconductor-elmer.data
|
public |
Data for the ELMER package
|
2024-12-19 |
|
bioconductor-gatefinder
|
public |
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
|
2024-12-19 |
|
bioconductor-annotationfilter
|
public |
Facilities for Filtering Bioconductor Annotation Resources
|
2024-12-19 |
|
bioconductor-cyanofilter
|
public |
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity
|
2024-12-19 |
|
bioconductor-pwmenrich
|
public |
PWM enrichment analysis
|
2024-12-19 |
|
blockclust
|
public |
Efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.
|
2024-12-19 |
