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consel
|
public |
CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection
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2025-09-26 |
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pybedlite
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public |
Lightweight python classes for interfacing with bed intervals.
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2025-09-26 |
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pybwa
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public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
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2025-09-26 |
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pm4ngs
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public |
PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data analysis.
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2025-09-26 |
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pharokka
|
public |
Fast Phage Annotation Program
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2025-09-25 |
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kmc
|
public |
Tools for efficient k-mer counting and filtering of reads based on k-mer content.
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2025-09-25 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
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2025-09-25 |
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vcfsim
|
public |
Script for generating simulated VCF's leveraging a coalescent simulating backend.
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2025-09-25 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
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2025-09-25 |
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bgen-cpp
|
public |
Reference implementation of the BGEN format, written in C++
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2025-09-25 |
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egglib
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public |
Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts.
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2025-09-25 |
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gnuplot-py
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public |
No Summary
|
2025-09-25 |
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soapdenovo2-gapcloser
|
public |
a tool named GapCloser for SOAPdenovo.
|
2025-09-25 |
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piper
|
public |
A lightweight python toolkit for gluing together restartable, robust command line pipelines.
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2025-09-25 |
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amiga
|
public |
Analysis of Microbial Growth Assays
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2025-09-25 |
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paraviewer
|
public |
Automated visualization generator for Paraphase HiFi analysis tool
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2025-09-25 |
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ngs-bits
|
public |
Short-read sequencing tools.
|
2025-09-25 |
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cenmap
|
public |
A centromere mapping and annotation pipeline for T2T human and primate genome assemblies implemented in Snakemake.
|
2025-09-25 |
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pxblat
|
public |
PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT.
|
2025-09-25 |
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seqwin
|
public |
Ultrafast identification of signature sequences in microbial genomes via minimizer graphs
|
2025-09-25 |
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stemcnv-check
|
public |
StemCNV-check: CNV Based Quality Control Workflow for Stem Cell SNP Array Data.
|
2025-09-25 |
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ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2025-09-25 |
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pbstarphase
|
public |
A phase-aware pharmacogenomic diplotyper for PacBio sequencing data
|
2025-09-25 |
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bamdam
|
public |
A post-mapping, post-least-common-ancestor toolkit for ancient DNA analysis.
|
2025-09-25 |
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merquryfk
|
public |
MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
|
2025-09-25 |
