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merquryfk
|
public |
MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
|
2025-04-22 |
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genomic_address_service
|
public |
Genomic Address Service: De novo clustering and cluster address assignment
|
2025-04-22 |
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profile_dists
|
public |
Profile Dists: Rapid calcualtion of allele profile distances and distance base querying
|
2025-04-22 |
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pyrodigal-gv
|
public |
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
|
2025-04-22 |
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isospecpy
|
public |
Python interface to IsoSpec++ isotopic envelope calculator library
|
2025-04-22 |
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virheat
|
public |
Visualize microbial evolution at the SNP level by creating a heatmap from vcf files.
|
2025-04-22 |
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mavis-config
|
public |
Config validation for running MAVIS via Snakemake
|
2025-04-22 |
|
r-immucellaimouse
|
public |
ImmuCellAI-mouse is a tool to estimate the abundance of 36 immune cells based on gene expression profile from RNA-Seq or microarray data.
|
2025-04-22 |
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earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline
|
2025-04-22 |
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bamdash
|
public |
Aggregate pathogen NGS results into an interactive plot
|
2025-04-22 |
|
syngap
|
public |
SynGAP: Synteny-based Gene structure Annotation Polisher
|
2025-04-22 |
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taxmyphage
|
public |
Script to assign taxonomy to a bacteriophage at the genus and species level
|
2025-04-22 |
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auriclass
|
public |
AuriClass is a tool for quickly predicting the clade of a Candida auris genome.
|
2025-04-22 |
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rapgreen
|
public |
Manipulate and annotate phylogenetic trees
|
2025-04-22 |
|
redundans
|
public |
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
|
2025-04-22 |
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nii2dcm
|
public |
nii2dcm: NIfTI to DICOM creation with Python
|
2025-04-22 |
|
assembly_finder
|
public |
Snakemake-powered cli pipeline to download genomes with NCBI datasets
|
2025-04-22 |
|
orthoflow
|
public |
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
|
2025-04-22 |
|
rabies
|
public |
RABIES: Rodent Automated Bold Improvement of EPI Sequences.
|
2025-04-22 |
|
hybracter
|
public |
An automated long-read first bacterial genome assembly pipeline.
|
2025-04-22 |
|
corgi
|
public |
Classifier for ORganelle Genomes Inter alia
|
2025-04-22 |
|
gdmicro
|
public |
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data
|
2025-04-22 |
|
ms2rescore
|
public |
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
|
2025-04-22 |
|
aspera-cli
|
public |
Command Line Interface for IBM Aspera products.
|
2025-04-22 |
|
vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2025-04-22 |
