|
sourmash
|
public |
Quickly search, compare, and analyze genomic and metagenomic data sets.
|
2025-08-07 |
|
gotohscan
|
public |
A search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments.
|
2025-08-07 |
|
structure-threader
|
public |
A program to parallelize runs of 'Structure', 'fastStructure' and 'MavericK'.
|
2025-08-07 |
|
gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2025-08-06 |
|
bismark
|
public |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.
|
2025-08-06 |
|
fastga
|
public |
FastGA - A Fast Genome Aligner.
|
2025-08-06 |
|
bamdash
|
public |
Aggregate pathogen NGS results into an interactive plot.
|
2025-08-06 |
|
biobb_gromacs
|
public |
biobb_gromacs is the Biobb module collection to perform molecular dynamics simulations using the GROMACS MD suite.
|
2025-08-06 |
|
phold
|
public |
Phage annotation using protein structures
|
2025-08-06 |
|
prosampler
|
public |
An ultra-fast motif finding program in large ChIP-seq datasets.
|
2025-08-06 |
|
flams
|
public |
Find Lysine Acylation & other Modification Sites
|
2025-08-06 |
|
dinamo
|
public |
An exact and efficient method for IUPAC motif discovery in DNA sequences
|
2025-08-06 |
|
razers3
|
public |
RazerS 3 - Faster, fully sensitive read mapping
|
2025-08-05 |
|
rseg
|
public |
The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.
|
2025-08-05 |
|
fastani
|
public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
|
2025-08-05 |
|
mash
|
public |
Fast sequence distance estimator that uses MinHash
|
2025-08-05 |
|
sincei
|
public |
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data.
|
2025-08-05 |
|
esme_pnetcdf_mvapich_4_0
|
public |
PnetCDF - Parallel netCDF
|
2025-08-05 |
|
esme_netcdf-c_mvapich_4_0
|
public |
NetCDF-C - netCDF interface for C
|
2025-08-05 |
|
esme_mvapich_4_0
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-08-05 |
|
esme_pio_mvapich_4_0
|
public |
ParallelIO - High-level parallel I/O library
|
2025-08-05 |
|
esme_esmf_mvapich_4_0
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-05 |
|
esme_netcdf-fortran_mvapich_4_0
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-05 |
|
esme_hdf5_mvapich_4_0
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-08-05 |
|
dapcy
|
public |
An sklearn implementation of discriminant analysis of principal components (DAPC) for population genetics.
|
2025-08-05 |
