|
bioconductor-hicexperiment
|
public |
Bioconductor class for interacting with Hi-C files in R
|
2024-12-24 |
|
bioconductor-omicplotr
|
public |
Visual Exploration of Omic Datasets Using a Shiny App
|
2024-12-24 |
|
bioconductor-multistateqtl
|
public |
Toolkit for the analysis of multi-state QTL data
|
2024-12-24 |
|
r-eggnog
|
public |
EggNOG database annotations.
|
2024-12-24 |
|
bioconductor-baalchip
|
public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
|
2024-12-24 |
|
r-wormbase
|
public |
Fetch Caenorhabditis elegans genome annotations from WormBase.
|
2024-12-24 |
|
bioconductor-mdts
|
public |
Detection of de novo deletion in targeted sequencing trios
|
2024-12-24 |
|
r-cellosaurus
|
public |
Cellosaurus identifier mapping toolkit.
|
2024-12-24 |
|
bioconductor-basicstarrseq
|
public |
Basic peak calling on STARR-seq data
|
2024-12-24 |
|
bioconductor-vplotr
|
public |
Set of tools to make V-plots and compute footprint profiles
|
2024-12-24 |
|
bioconductor-mgfr
|
public |
Marker Gene Finder in RNA-seq data
|
2024-12-24 |
|
r-rapidr
|
public |
Package to perform non-invasive fetal testing for aneuploidies using sequencing count data from cell-free DNA
|
2024-12-24 |
|
bioconductor-txdbmaker
|
public |
Tools for making TxDb objects from genomic annotations
|
2024-12-24 |
|
bioconductor-pics
|
public |
Probabilistic inference of ChIP-seq
|
2024-12-24 |
|
r-pipette
|
public |
Pipette biological data in and out of R.
|
2024-12-24 |
|
bioconductor-organism.dplyr
|
public |
dplyr-based Access to Bioconductor Annotation Resources
|
2024-12-24 |
|
bioconductor-genomicfeatures
|
public |
Query the gene models of a given organism/assembly
|
2024-12-24 |
|
pdb2fasta
|
public |
Convert PDB structures to FASTA sequences.
|
2024-12-24 |
|
bioconductor-tcseq
|
public |
Time course sequencing data analysis
|
2024-12-24 |
|
r-exomedepth
|
public |
Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
|
2024-12-24 |
|
bioconductor-crisprvariants
|
public |
Tools for counting and visualising mutations in a target location
|
2024-12-24 |
|
bioconductor-prebs
|
public |
Probe region expression estimation for RNA-seq data for improved microarray comparability
|
2024-12-24 |
|
bioconductor-breakpointr
|
public |
Find breakpoints in Strand-seq data
|
2024-12-24 |
|
bioconductor-aneufinder
|
public |
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
|
2024-12-24 |
|
bioconductor-mosaics
|
public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
|
2024-12-24 |
|
bioconductor-qdnaseq.hg19
|
public |
QDNAseq bin annotation for hg19
|
2024-12-24 |
|
bioconductor-cfdnakit
|
public |
Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)
|
2024-12-24 |
|
bioconductor-qdnaseq.mm10
|
public |
Bin annotation mm10
|
2024-12-24 |
|
alevin-fry
|
public |
alevin-fry is a tool for the efficient processing of single-cell data based on RAD files produced by alevin
|
2024-12-24 |
|
bioconductor-ace
|
public |
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
|
2024-12-24 |
|
bioconductor-genebreak
|
public |
Gene Break Detection
|
2024-12-24 |
|
bioconductor-panelcn.mops
|
public |
CNV detection tool for targeted NGS panel data
|
2024-12-24 |
|
bioconductor-variantexperiment
|
public |
A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend
|
2024-12-24 |
|
bioconductor-genesis
|
public |
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
|
2024-12-24 |
|
bioconductor-trnadbimport
|
public |
Importing from tRNAdb and mitotRNAdb as GRanges objects
|
2024-12-24 |
|
bioconductor-spatialdecon
|
public |
Deconvolution of mixed cells from spatial and/or bulk gene expression data
|
2024-12-24 |
|
bioconductor-geodiff
|
public |
Count model based differential expression and normalization on GeoMx RNA data
|
2024-12-24 |
|
bioconductor-affylmgui
|
public |
GUI for limma Package with Affymetrix Microarrays
|
2024-12-24 |
|
bioconductor-hgu133a2cdf
|
public |
A package containing an environment representing the HG-U133A_2.cdf file.
|
2024-12-24 |
|
bioconductor-poplarprobe
|
public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Poplar\_probe\_tab.
|
2024-12-24 |
|
bioconductor-hgu133plus2probe
|
public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\_Plus\_2\_probe\_tab.
|
2024-12-24 |
|
bioconductor-htrat230pmprobe
|
public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_Rat230\_PM\_probe\_tab.
|
2024-12-24 |
|
bioconductor-mirage
|
public |
MiRNA Ranking by Gene Expression
|
2024-12-24 |
|
bioconductor-moexexonprobesetlocation
|
public |
This package was automatically created by package AnnotationForge version 1.7.17. The exon-level probeset genome location was retrieved from Netaffx using AffyCompatible.
|
2024-12-24 |
|
bioconductor-mu11ksubbprobe
|
public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mu11KsubB\_probe\_tab.
|
2024-12-24 |
|
bioconductor-htmg430aprobe
|
public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430A\_probe\_tab.
|
2024-12-24 |
|
bioconductor-xtropicaliscdf
|
public |
A package containing an environment representing the X_tropicalis.cdf file.
|
2024-12-24 |
|
bioconductor-htmg430acdf
|
public |
A package containing an environment representing the HT_MG-430A.cdf file.
|
2024-12-24 |
|
bioconductor-hgu133bprobe
|
public |
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133B\_probe\_tab.
|
2024-12-24 |
|
bioconductor-canine.db0
|
public |
Base Level Annotation databases for canine
|
2024-12-24 |
