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bioconductor-scdataviz
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public |
scDataviz: single cell dataviz and downstream analyses
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2024-12-24 |
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bioconductor-nxtirfdata
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public |
Data for NxtIRF
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2024-12-24 |
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bioconductor-isee
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public |
Interactive SummarizedExperiment Explorer
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2024-12-24 |
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bioconductor-infercnv
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public |
Infer Copy Number Variation from Single-Cell RNA-Seq Data
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2024-12-24 |
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bioconductor-probamr
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public |
Generating SAM file for PSMs in shotgun proteomics data
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2024-12-24 |
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bioconductor-miqc
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public |
Flexible, probabilistic metrics for quality control of scRNA-seq data
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2024-12-24 |
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bioconductor-loomexperiment
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public |
LoomExperiment container
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2024-12-24 |
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bioconductor-epitxdb
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public |
Storing and accessing epitranscriptomic information using the AnnotationDbi interface
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2024-12-24 |
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bioconductor-ccimpute
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public |
ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)
|
2024-12-24 |
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bioconductor-txcutr
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public |
Transcriptome CUTteR
|
2024-12-24 |
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bioconductor-baynorm
|
public |
Single-cell RNA sequencing data normalization
|
2024-12-24 |
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bioconductor-sipsic
|
public |
Calculate Pathway Scores for Each Cell in scRNA-Seq Data
|
2024-12-24 |
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bioconductor-outrider
|
public |
OUTRIDER - OUTlier in RNA-Seq fInDER
|
2024-12-24 |
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bioconductor-scnorm
|
public |
Normalization of single cell RNA-seq data
|
2024-12-24 |
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bioconductor-switchde
|
public |
Switch-like differential expression across single-cell trajectories
|
2024-12-24 |
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bioconductor-recoup
|
public |
An R package for the creation of complex genomic profile plots
|
2024-12-24 |
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bioconductor-busseq
|
public |
Batch Effect Correction with Unknow Subtypes for scRNA-seq data
|
2024-12-24 |
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bioconductor-sitadela
|
public |
An R package for the easy provision of simple but complete tab-delimited genomic annotation from a variety of sources and organisms
|
2024-12-24 |
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bioconductor-celltrails
|
public |
Reconstruction, visualization and analysis of branching trajectories
|
2024-12-24 |
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bioconductor-organismdbi
|
public |
Software to enable the smooth interfacing of different database packages
|
2024-12-24 |
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bioconductor-speckle
|
public |
Statistical methods for analysing single cell RNA-seq data
|
2024-12-24 |
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bioconductor-proactiv
|
public |
Estimate Promoter Activity from RNA-Seq data
|
2024-12-24 |
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bioconductor-crlmm
|
public |
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
|
2024-12-24 |
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bioconductor-mbpcr
|
public |
Bayesian Piecewise Constant Regression for DNA copy number estimation
|
2024-12-24 |
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bioconductor-genelendatabase
|
public |
Lengths of mRNA transcripts for a number of genomes
|
2024-12-24 |
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bioconductor-omicade4
|
public |
Multiple co-inertia analysis of omics datasets
|
2024-12-24 |
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bioconductor-bgeecall
|
public |
Automatic RNA-Seq present/absent gene expression calls generation
|
2024-12-24 |
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r-intlim
|
public |
Integration of Omics Data Using Linear Modeling
|
2024-12-24 |
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bioconductor-edirquery
|
public |
Query the EDIR Database For Specific Gene
|
2024-12-24 |
|
bioconductor-mygene
|
public |
Access MyGene.Info_ services
|
2024-12-24 |
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bioconductor-hiccompare
|
public |
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
|
2024-12-24 |
|
bioconductor-hicexperiment
|
public |
Bioconductor class for interacting with Hi-C files in R
|
2024-12-24 |
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bioconductor-omicplotr
|
public |
Visual Exploration of Omic Datasets Using a Shiny App
|
2024-12-24 |
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bioconductor-multistateqtl
|
public |
Toolkit for the analysis of multi-state QTL data
|
2024-12-24 |
|
r-eggnog
|
public |
EggNOG database annotations.
|
2024-12-24 |
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bioconductor-baalchip
|
public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
|
2024-12-24 |
|
r-wormbase
|
public |
Fetch Caenorhabditis elegans genome annotations from WormBase.
|
2024-12-24 |
|
bioconductor-mdts
|
public |
Detection of de novo deletion in targeted sequencing trios
|
2024-12-24 |
|
r-cellosaurus
|
public |
Cellosaurus identifier mapping toolkit.
|
2024-12-24 |
|
bioconductor-basicstarrseq
|
public |
Basic peak calling on STARR-seq data
|
2024-12-24 |
|
bioconductor-vplotr
|
public |
Set of tools to make V-plots and compute footprint profiles
|
2024-12-24 |
|
bioconductor-mgfr
|
public |
Marker Gene Finder in RNA-seq data
|
2024-12-24 |
|
r-rapidr
|
public |
Package to perform non-invasive fetal testing for aneuploidies using sequencing count data from cell-free DNA
|
2024-12-24 |
|
bioconductor-txdbmaker
|
public |
Tools for making TxDb objects from genomic annotations
|
2024-12-24 |
|
bioconductor-pics
|
public |
Probabilistic inference of ChIP-seq
|
2024-12-24 |
|
r-pipette
|
public |
Pipette biological data in and out of R.
|
2024-12-24 |
|
bioconductor-organism.dplyr
|
public |
dplyr-based Access to Bioconductor Annotation Resources
|
2024-12-24 |
|
bioconductor-genomicfeatures
|
public |
Query the gene models of a given organism/assembly
|
2024-12-24 |
|
pdb2fasta
|
public |
Convert PDB structures to FASTA sequences.
|
2024-12-24 |
|
bioconductor-tcseq
|
public |
Time course sequencing data analysis
|
2024-12-24 |
