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Package Name Access Summary Updated
bioconductor-hsagilentdesign026652.db public Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories 2024-12-26
bioconductor-hs25kresogen.db public RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen) assembled using data from public repositories 2024-12-26
bioconductor-diffutr public diffUTR: Streamlining differential exon and 3' UTR usage 2024-12-26
bioconductor-h20kcod.db public Codelink UniSet Human 20k I Bioarray annotation data (chip h20kcod) assembled using data from public repositories 2024-12-26
bioconductor-aspli public Analysis of Alternative Splicing Using RNA-Seq 2024-12-26
bioconductor-pedbarrayv9.db public FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9) assembled using data from public repositories 2024-12-26
bioconductor-trackviewer public A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data 2024-12-26
bioconductor-hgug4845a.db public agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories 2024-12-26
bioconductor-cocitestats public Different test statistics based on co-citation. 2024-12-26
bioconductor-rnamodr public Detection of post-transcriptional modifications in high throughput sequencing data 2024-12-26
bioconductor-pedbarrayv10.db public FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10) assembled using data from public repositories 2024-12-26
bioconductor-tximeta public Transcript Quantification Import with Automatic Metadata 2024-12-26
bioconductor-shdz.db public SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ) assembled using data from public repositories 2024-12-26
bioconductor-hguqiagenv3.db public Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3) assembled using data from public repositories 2024-12-26
bioconductor-ogre public Calculate, visualize and analyse overlap between genomic regions 2024-12-26
bioconductor-mslp public Predict synthetic lethal partners of tumour mutations 2024-12-26
bioconductor-hthgu133plusb.db public Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) 2024-12-26
bioconductor-chimeraviz public Visualization tools for gene fusions 2024-12-26
bioconductor-h10kcod.db public Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) assembled using data from public repositories 2024-12-26
bioconductor-hgu133a.db public Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a) 2024-12-26
bioconductor-clariomshumanhttranscriptcluster.db public Affymetrix clariomshumanht annotation data (chip clariomshumanhttranscriptcluster) 2024-12-26
r-shaman public The shaman package - sampling HiC contact matrices for a-parametric normalization 2024-12-26
bioconductor-hugene21stprobeset.db public Affymetrix hugene21 annotation data (chip hugene21stprobeset) 2024-12-26
bioconductor-tvtb public TVTB: The VCF Tool Box 2024-12-26
bioconductor-partheenmetadata.db public PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories 2024-12-26
bioconductor-duplexdiscoverer public Analysis of the data from RNA duplex probing experiments 2024-12-26
bioconductor-hgubeta7.db public Unknown annotation data (chip hgubeta7) assembled using data from public repositories 2024-12-26
bioconductor-hu35ksubb.db public Affymetrix Affymetrix Hu35KsubB Array annotation data (chip hu35ksubb) 2024-12-26
bioconductor-comapr public Crossover analysis and genetic map construction 2024-12-26
bioconductor-illuminahumanv2beadid.db public Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID) assembled using data from public repositories to be used with data summarized from bead-level data with numeric ArrayAddressIDs as keys. Illumina probes with a No match or Bad quality score were removed prior to annotation. See http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html and Barbosa-Morais et al (2010) A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Research. 2024-12-26
bioconductor-regutools public regutools: an R package for data extraction from RegulonDB 2024-12-26
bioconductor-hgu133b.db public Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b) 2024-12-26
bioconductor-clariomshumantranscriptcluster.db public Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster) 2024-12-26
bioconductor-illuminahumanv3.db public Illumina HumanHT12v3 annotation data (chip illuminaHumanv3) assembled using data from public repositories 2024-12-26
bioconductor-allelicimbalance public Investigates Allele Specific Expression 2024-12-26
bioconductor-hgu95b.db public Affymetrix Affymetrix HG U95B Array annotation data (chip hgu95b) 2024-12-26
bioconductor-genomicinteractions public Utilities for handling genomic interaction data 2024-12-25
bioconductor-hgug4111a.db public Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories 2024-12-25
bioconductor-roberts2005annotation.db public Roberts2005Annotation Annotation Data (Roberts2005Annotation) assembled using data from public repositories 2024-12-25
bioconductor-cicero public Predict cis-co-accessibility from single-cell chromatin accessibility data 2024-12-25
bioconductor-hugene20stprobeset.db public Affymetrix hugene20 annotation data (chip hugene20stprobeset) 2024-12-25
bioconductor-cummerbund public Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data. 2024-12-25
bioconductor-illuminahumanmethylation27k.db public Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k) assembled using data from public repositories 2024-12-25
bioconductor-pviz public Peptide Annotation and Data Visualization using Gviz 2024-12-25
bioconductor-artms public Analytical R tools for Mass Spectrometry 2024-12-25
bioconductor-tadar public Transcriptome Analysis of Differential Allelic Representation 2024-12-25
bioconductor-illuminahumanwgdaslv3.db public Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3) assembled using data from public repositories 2024-12-25
bioconductor-ping public Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data 2024-12-25
bioconductor-huex10stprobeset.db public Affymetrix huex10 annotation data (chip huex10stprobeset) 2024-12-25
bioconductor-maser public Mapping Alternative Splicing Events to pRoteins 2024-12-25
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