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selene-sdk
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public |
Framework for developing sequence-level deep learning networks.
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2025-08-14 |
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pytabix
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public |
Fast random access to sorted files compressed with bgzip and indexed by tabix.
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2025-08-14 |
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ntsynt
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public |
Detecting multi-genome synteny blocks using minimizer graph mapping.
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2025-08-14 |
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ucsc-newpythonprog
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public |
Make a skeleton for a new python program.
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2025-08-14 |
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haproh
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public |
Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel
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2025-08-14 |
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panoct
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public |
PanOCT, Pan-genome Ortholog Clustering Tool, is a program for pan-genomic analysis of closely related prokaryotic species or strains
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2025-08-14 |
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pairsnp
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public |
pairsnp calculates pairwise SNP distance matrices from multiple sequence alignment fasta files.
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2025-08-14 |
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tbox-scan
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public |
tbox-scan is for detecting and classifying T-boxes in DNA sequences.
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2025-08-14 |
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lightassembler
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public |
Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.
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2025-08-14 |
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libstatgen
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public |
Useful set of classes for creating statistical genetic programs.
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2025-08-14 |
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longgf
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public |
A fast tool to detect gene fusion from long-read RNA-seq data.
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2025-08-14 |
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checkm-genome
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public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
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2025-08-14 |
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mapping-iterative-assembler
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public |
Consensus calling or `reference assisted assembly`, chiefly of ancient mitochondria.
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2025-08-14 |
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magpurify
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public |
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
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2025-08-14 |
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mapdia
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public |
Performs essential data preprocessing, including novel retention time-based normalization method and a sequence of peptide/fragment selection steps, and more importantly, hierarchical model-based statistical significance analysis for multi-group comparisons under representative experimental designs.
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2025-08-14 |
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mea
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public |
Mea was developed as part of the lab class "Bioinformatik von RNA- und Proteinstrukturen (Praktikum, Modul 10-202-2208)". The package predicts maximum expected accuracy (MEA) RNA secondary structures from dot plots of RNAs while correcting the score in dependence of base pair span. Furthermore, it provides tools to evaluate predictions and optimize parameters.
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2025-08-14 |
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livekraken
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public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
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2025-08-14 |
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autocycler
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public |
A tool for generating consensus long-read assemblies for bacterial genomes.
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2025-08-13 |
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cuna
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public |
CUNA: Cytosine Uracil Neural Algorithm for ancient DNA damage detection using nanopore signals.
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2025-08-13 |
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scoring-matrices
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public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
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2025-08-13 |
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tetrimmer
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public |
TETrimmer is designed to replace and assist TE manual curation.
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2025-08-13 |
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perbase
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public |
Per-base metrics on BAM/CRAM files.
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2025-08-13 |
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esme_hdf5_mvapich_4_0_ucx
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public |
HDF5 - Hierarchical Data Format 5
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2025-08-13 |
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esme_netcdf-c_mvapich_4_0_ucx
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public |
NetCDF-C - netCDF interface for C
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2025-08-13 |
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esme_mvapich_4_0_ucx
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public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
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2025-08-13 |
