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clam
|
public |
clam is a tool for classification of callable loci intervals, and accurate estimation of population genetic statistics.
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2025-04-22 |
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genome2tree
|
public |
A pipeline to build phylogenetic trees from genome comparisons
|
2025-04-22 |
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perl-postscript-simple
|
public |
Produce PostScript files from Perl.
|
2025-04-22 |
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pysctransform
|
public |
Python package to perform normalization and variance-stabilization of single-cell data.
|
2025-04-22 |
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vcfx
|
public |
VCFX: A Comprehensive VCF Manipulation Toolkit
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2025-04-22 |
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metaspace2020
|
public |
Python library for connecting to the METASPACE platform.
|
2025-04-22 |
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ogtfinder
|
public |
OGTFinder is an optimal growth temperature prediction tool for prokaryotes using proteome-derived features.
|
2025-04-22 |
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ddqc
|
public |
Biology-centered data-driven quality control for scRNA-seq.
|
2025-04-22 |
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yleaf-pipelines
|
public |
Yleaf-pipelines - A pipeline-optimized version of Yleaf, a tool for Y-chromosome haplogroup prediction.
|
2025-04-22 |
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soi
|
public |
Orthology Index (OrthoIndex or OI) determines the orthology of a syntenic block.
|
2025-04-22 |
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ngsfetch
|
public |
Fast retrieval of metadata and fastq files with ffq and aria2c
|
2025-04-22 |
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aliceasm
|
public |
Efficient HiFi genome assembler producing haplotype-separated assemblies
|
2025-04-22 |
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vambcore
|
public |
Performant backend functions for the Vamb binning tool
|
2025-04-22 |
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ncbi-datasets-pyclient
|
public |
NCBI Datasets API
|
2025-04-22 |
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genotypy
|
public |
Automatically detect genomic barcodes integrated into loci of interest from sequencing data
|
2025-04-22 |
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scanpy-cli
|
public |
CLI for Scanpy
|
2025-04-22 |
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yleaf
|
public |
Yleaf - A tool for Y-chromosome haplogroup prediction
|
2025-04-22 |
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psauron
|
public |
PSAURON: a machine learning model for rapid assessment of protein coding gene annotation
|
2025-04-22 |
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spacerextractor
|
public |
Extract CRISPR spacers from metagenome short reads.
|
2025-04-22 |
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grz-pydantic-models
|
public |
Pydantic models for the GRZ metadata schema
|
2025-04-22 |
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fastcov
|
public |
This package installs fastcov and all it's dependencies. fastcov is used to plot coverage plots based on BAM files.
|
2025-04-22 |
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alientrimmer
|
public |
Tool for trimming non-confident bases and alien oligo-nucleotide sequences from sequencing reads.
|
2025-04-22 |
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bcftools-liftover-plugin
|
public |
Tools to work with GWAS-VCF summary statistics files (liftover plugin only)
|
2025-04-22 |
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longcalld
|
public |
longcallD: local-haplotagging-based small and structural variant calling
|
2025-04-22 |
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isotools
|
public |
Framework for the analysis of long read transcriptome sequencing data
|
2025-04-22 |
