| Package Name | Access | Summary | Updated |
|---|---|---|---|
| dajin2 | public | One-step genotyping tools for targeted long-read sequencing. | 2025-09-03 |
| scglue | public | Graph-linked unified embedding for unpaired single-cell multi-omics data integration | 2025-09-03 |
| mmlong2-lite | public | Lightweight workflow for microbial genome recovery using either Nanopore or PacBio HiFi reads | 2025-09-03 |
| perl-bio-easel | public | Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline. | 2025-09-03 |
| biobb_common | public | Biobb_common is the base package required to use the biobb packages. | 2025-09-03 |
| cycle_finder | public | A de novo analysis tool for tandem and interspersed repeats based on cycle-finding | 2025-09-03 |
| probeit | public | Probeit: a probe designer for detecting and genotyping pathogen!!! | 2025-09-02 |
| genomedata | public | Tools for accessing large amounts of genomic data. | 2025-09-02 |
| quip | public | Aggressive compression of FASTQ and SAM/BAM files. | 2025-09-02 |
| pureclip | public | PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP. | 2025-09-02 |
| bacpage | public | An easy-to-use pipeline for the assembly and analysis of bacterial genomes. | 2025-09-02 |
| verticall | public | A tool for building recombination-free trees. | 2025-09-02 |
| predicthaplo | public | This software aims at reconstructing haplotypes from next-generation sequencing data. | 2025-09-02 |
| deeplc | public | DeepLC: Retention time prediction for (modified) peptides using Deep Learning. | 2025-09-02 |
| sequana_pipetools | public | A set of tools to help building or using Sequana pipelines | 2025-09-02 |
| perl-term-table | public | Format a header and rows into a table | 2025-09-02 |
| haplotype-lso | public | Haplotype Candidatus Liberibacter solanacearum (Lso) samples from targeted amplicon capillary sequencing data | 2025-09-02 |
| sequip | public | Perl module for biological sequence analysis and supporting utilities.. | 2025-09-02 |
| markov_genome | public | A Rust package for Markov chain sequence simulation. | 2025-09-02 |
| versionix | public | Get version of any tools. | 2025-09-02 |
| nbitk | public | nbitk: Naturalis BioInformatics ToolKit | 2025-09-02 |
| seqspec | public | File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data. | 2025-09-02 |
| centrifuger | public | Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification. | 2025-09-02 |
| sshash | public | SSHash is a compressed dictionary data structure for k-mers (strings of length k over the DNA alphabet {A,C,G,T}), based on Sparse and Skew Hashing. | 2025-09-02 |
| r-shinyngs | public | Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion. | 2025-09-02 |
