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docking_py
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public |
Docking_py is a python library allowing a simplified use of the Smina, vina, qvina2 and qvinaw docking software. Docking_py can be easily automatize and scripted.
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2023-06-16 |
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bio-ting
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public |
ting is a tool clustering large scale T cell receptor repertoires by antigen-specificity
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2023-06-16 |
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cansnper2
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public |
A toolkit for SNP-typing bacterial genomes.
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2023-06-16 |
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genometreetk
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public |
A toolbox for working with genome trees.
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2023-06-16 |
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start-asap
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public |
Prepare project directory and project sheet for ASA3P
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2023-06-16 |
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sarscov2summary
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public |
Formatter for Galaxy SARS-CoV2 Selection Analysis Workflow
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2023-06-16 |
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sarscov2formatter
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public |
Formatter for Galaxy SARS-CoV2 Selection Analysis Workflow
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2023-06-16 |
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transposonpsi
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public |
TransposonPSI is an analysis tool to identify protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements.
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2023-06-16 |
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pygvcf2coverage
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public |
Python tool to extra coverage from gVCF files.
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2023-06-16 |
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varda2-client
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public |
A python CLI to Varda2 frequency database server.
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2023-06-16 |
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unfazed
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public |
Extended read-backed and allele-balance phasing for de novo variation (SNVs, INDELS, SVs, and CNVs)
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2023-06-16 |
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parent-map
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public |
Analyze parental contributions to evolved or engineered protein or DNA sequences
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2023-06-16 |
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cthreepo
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public |
A python script to interconvert seq-ids in gff3, gtf, bed and other files.
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2023-06-16 |
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targetdb
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public |
Package with an application to generate report on potential drug targets
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2023-06-16 |
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hitea
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public |
computational tool to identify trasposable element insertions using Hi-C data
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2023-06-16 |
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quasildr
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public |
Quasilinear data representations for single-cell omics data analysis.
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2023-06-16 |
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gemoma
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public |
Gene Model Mapper (GeMoMa) is a homology-based gene prediction program.
GeMoMa uses the annotation of protein-coding genes in a reference genome to infer the annotation of protein-coding genes in a target genome.
Thereby, GeMoMa utilizes amino acid sequence and intron position conservation.
In addition, GeMoMa allows to incorporate RNA-seq evidence for splice site prediction.
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2023-06-16 |
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opentargets
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public |
Client for Open Targets REST API at targetvalidation.org
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2023-06-16 |
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nanopolishcomp
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public |
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files
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2023-06-16 |
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cath-tools
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public |
Protein structure comparison tools such as SSAP, as used by the Orengo Group in curating CATH.
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2023-06-16 |
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nanocompore
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public |
Nanocompore identifies raw signal changes between two conditions dRNA-Seq data.
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2023-06-16 |
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bedparse
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public |
A simple library and CLI tool to manipulate BED files
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2023-06-16 |
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gifrop
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public |
Identify, classify, and cluster genomic islands from roary pangenomes
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2023-06-16 |
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metalign
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public |
Metalign: efficient alignment-based metagenomic profiling via containment min hash
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2023-06-16 |
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pygmes
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public |
Run GeneMark-ES using pretrained models
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2023-06-16 |
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pmmrcalculator
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public |
A small python tool to calculate pairwise mismatch rate between all individuals in an EigenStrat dataset.
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2023-06-16 |
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fragbuilder
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public |
FragBuilder is a tool to create, setup and analyze QM calculations on peptides.
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2023-06-16 |
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deepaclive
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public |
Detecting novel pathogens from NGS reads in real-time during a sequencing run.
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2023-06-16 |
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mp3treesim
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public |
Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels
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2023-06-16 |
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sanitizeme
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public |
GUI and CLI tool for removing host DNA from NGS data.
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2023-06-16 |
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nebulizer
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public |
Command-line utilities to help with managing users, data libraries and tools in a Galaxy instance
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2023-06-16 |
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cnvpytor
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public |
Python extension of CNVnator
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2023-06-16 |
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tendo
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public |
Tendo is a python module that adds basic functionality that is not (yet) provided by Python.
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2023-06-16 |
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pydpi
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public |
A powerful tool for chemoinformatics, bioinforamtics and chemogenomics study
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2023-06-16 |
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perl-bio-phylo-cipres
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public |
Reusable components for CIPRES REST API access
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2023-06-16 |
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haphpipe
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public |
HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
|
2023-06-16 |
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deepmased
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public |
Deep learning for Metagenome Assembly Error Detection
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2023-06-16 |
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bttoxin_digger
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public |
A toxin minging tool for Bacillus thuringiensis
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2023-06-16 |
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diego
|
public |
Detection of differential alternative splicing using Aitchinson`s geometry
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2023-06-16 |
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bttcmp
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public |
A toxin minging tool for Bacillus thuringiensis
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2023-06-16 |
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tag
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public |
Genome annotation data analysis and management implemented in pure Python.
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2023-06-16 |
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openduck
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public |
Open source library for dynamic undocking (DUck)
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2023-06-16 |
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transcov
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public |
A software for mapping coverage around transcription start sites
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2023-06-16 |
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abacat
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public |
abacat - A BActerial genome Curation and Annotation Toolkit
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2023-06-16 |
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primedrpa
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public |
RPA primer & probe design tool.
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2023-06-16 |
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cell-types-analysis
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public |
A suite of scripts for analysis of scRNA-seq cell type classification tools outputs.
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2023-06-16 |
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rxdock
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public |
RxDock is a fork of rDock (GitLab), a fast, versatile and open-source program for docking ligands to proteins and nucleic acids.
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2023-06-16 |
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plasmidid
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public |
Pipeline for plasmid identification and reconstruction
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2023-06-16 |
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tasmanian-mismatch
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public |
Tasmanian tool to analyze mismatches at read and position in high throughput sequencing data
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2023-06-16 |
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treesapp
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public |
TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins
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2023-06-16 |
