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jgoslin
|
public |
This project is a parser, validator and normalizer for shorthand lipid names, based on the Goslin project.
|
2023-11-28 |
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visor
|
public |
Haplotype-aware structural variants simulator for short, long and linked reads
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2023-11-28 |
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cstag-cli
|
public |
Command line interface of cstag to manipulate the minimap2's CS tag
|
2023-11-25 |
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gunc
|
public |
Python package for detection of chimerism and contamination in prokaryotic genomes.
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2023-11-24 |
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anansnake
|
public |
Automated ANANSE analysis with seq2science & snakemake!
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2023-11-23 |
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iphop
|
public |
Predict host genus from genomes of uncultivated phages.
|
2023-11-22 |
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gimmemotifs
|
public |
Motif prediction pipeline and various motif-related tools
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2023-11-22 |
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gimmemotifs-minimal
|
public |
Motif prediction pipeline and various motif-related tools
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2023-11-22 |
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hpcblast
|
public |
A wrapper for NCBI-BLAST+ suite which provides a simple and efficient method to accelerate the blast search
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2023-11-22 |
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qualimap
|
public |
Quality control of alignment sequencing data and its derivatives like feature counts
|
2023-11-21 |
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srnaminer
|
public |
sRNAminer: a Multifunctional Toolkit for Next Generation Sequencing Small RNA Data Mining
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2023-11-21 |
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gapmm2
|
public |
gapmm2: gapped alignment using minimap2
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2023-11-17 |
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lorax
|
public |
A long-read analysis toolbox for cancer genomics
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2023-11-17 |
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mimseq
|
public |
Modification-induced misincorporation tRNA sequencing.
|
2023-11-16 |
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deeparg
|
public |
A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
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2023-11-15 |
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hic2cool
|
public |
A converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler).
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2023-11-15 |
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goalign
|
public |
goalign is a set of command line tools to manipulate multiple alignments
|
2023-11-14 |
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deepbgc
|
public |
DeepBGC - Biosynthetic Gene Cluster detection and classification
|
2023-11-12 |
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fit_nbinom
|
public |
Script to fit negative binomial distributions via maximum likelihood estimation.
|
2023-11-11 |
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brooklyn_plot
|
public |
Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data
|
2023-11-08 |
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dgenies
|
public |
Dotplot large Genomes in an Interactive, Efficient and Simple way
|
2023-11-07 |
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amptk
|
public |
AMPtk: Amplicon tool kit for processing high throughput amplicon sequencing data.
|
2023-11-07 |
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blastbesties
|
public |
Rapid discovery of reciprocal best blast pairs from BLAST output files.
|
2023-11-07 |
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nmrml2isa
|
public |
nmrml2isa - nmrML to ISA-Tab parsing tool
|
2023-11-07 |
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scmap-cli
|
public |
CLI scripts for the scmap package
|
2023-11-07 |
|
snakesv
|
public |
snakeSV: Flexible framework for large-scale SV discovery
|
2023-11-06 |
|
perl-metabolomics-fragment-annotation
|
public |
Perl extension for fragment annotation in metabolomics
|
2023-11-04 |
|
omark
|
public |
OMArk - Proteome quality assesment based on OMAmer placements
|
2023-11-03 |
|
isocor
|
public |
A Isotope Correction for mass spectrometry labeling experiments
|
2023-11-02 |
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mtm-align
|
public |
Align multiple protein structures
|
2023-11-02 |
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r-pspecterlib
|
public |
Proteomics R package for matching peaks in digested and intact proteomics
|
2023-11-01 |
|
dna_features_viewer
|
public |
Plot features from DNA sequences (e.g. Genbank) with Python
|
2023-11-01 |
|
catch
|
public |
A package for designing compact and comprehensive capture probe sets.
|
2023-11-01 |
|
phantasm-xenogi
|
public |
xenoGI for PHANTASM
|
2023-10-31 |
|
mzmine
|
public |
Integrative analysis of multimodal mass spectrometry data
|
2023-10-30 |
|
atlas-fastq-provider
|
public |
A package to provide FASTQs via download or file system linking.
|
2023-10-30 |
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vcf2cytosure
|
public |
Convert VCF with structural variations to CytoSure format
|
2023-10-30 |
|
itolparser
|
public |
Small script to produce iTOL colorstrip metadata files from a table
|
2023-10-29 |
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phylogenize
|
public |
Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny.
|
2023-10-29 |
|
args_oap
|
public |
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
|
2023-10-28 |
|
gdmicro
|
public |
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data
|
2023-10-28 |
|
pygenomeviz
|
public |
A genome visualization python package for comparative genomics
|
2023-10-28 |
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fastmlst
|
public |
A Fast Multilocus Sequence Typing scan against PubMLST typing schemes
|
2023-10-27 |
|
auriclass
|
public |
AuriClass is a tool for quickly predicting the clade of a Candida auris genome.
|
2023-10-27 |
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bismark
|
public |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.
|
2023-10-26 |
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microhapdb
|
public |
Portable database of microhaplotype marker and allele frequency data.
|
2023-10-25 |
|
gndiff
|
public |
GNdiff compares scientific names from two files
|
2023-10-25 |
|
arvados-cwl-runner
|
public |
Arvados Common Workflow Language runner
|
2023-10-25 |
|
mavis-config
|
public |
Config validation for running MAVIS via Snakemake
|
2023-10-23 |
|
graphanalyzer
|
public |
A tool to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database
|
2023-10-23 |
