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ontime
|
public |
Extract subsets of ONT (Nanopore) reads based on time
|
2024-02-13 |
|
mira-multiome
|
public |
Single-cell multiomics data analysis
|
2024-02-12 |
|
lisa2
|
public |
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data. X. Shirley Liu Lab, 2020
|
2024-02-12 |
|
pass
|
public |
Proteome Assembler with Short Sequence peptides
|
2024-02-12 |
|
pytransaln
|
public |
Translation-guided nucleotide alignment for coding sequences
|
2024-02-10 |
|
r-linxreport
|
public |
LINX Result Reporter
|
2024-02-10 |
|
purge_haplotigs
|
public |
Pipeline to help with curating heterozygous diploid genome assemblies.
|
2024-02-09 |
|
gffpandas
|
public |
Parse GFF3 into Pandas dataframes
|
2024-02-09 |
|
perl-ms
|
public |
Namespace for mass spectrometry-related libraries
|
2024-02-09 |
|
orsum
|
public |
A tool to filter long lists of enriched terms resulting from one or more enrichment analyses
|
2024-02-08 |
|
koverage
|
public |
Read-coverage statistics pipelines for multiple samples
|
2024-02-08 |
|
snaketool-utils
|
public |
Utility functions for Snaketool CLI for bioinformatics tools
|
2024-02-08 |
|
virulencefinder
|
public |
VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria
|
2024-02-07 |
|
r-chord
|
public |
Predict HRD using somatic mutations contexts
|
2024-02-07 |
|
hmftools-gripss
|
public |
GRIPSS applies a set of filtering and post processing steps on GRIDSS paired tumor-normal output to produce a high confidence set of somatic SV for a tumor sample.
|
2024-02-07 |
|
mass2chem
|
public |
Common utilities for interpreting mass spectrometry data
|
2024-02-06 |
|
degenotate
|
public |
Annotation of degeneracy of sites in coding regions of a genome
|
2024-02-05 |
|
seq2science
|
public |
Automated preprocessing of Next-Generation-Sequencing data.
|
2024-02-05 |
|
novoplasty
|
public |
The organelle assembler and heteroplasmy caller
|
2024-02-05 |
|
pypolca
|
public |
Standalone Python re-implementation of the POLCA polisher from MaSuRCA
|
2024-02-02 |
|
dropkick
|
public |
Automated scRNA-seq filtering
|
2024-02-02 |
|
ephemeris
|
public |
Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
|
2024-02-01 |
|
pourrna
|
public |
Compute local minima and respective transition rates of an RNA energy landscape.
|
2024-02-01 |
|
strainscan
|
public |
One efficient and accurate strain-level microbiome composition analysis tool based on reference genomes and k-mers.
|
2024-02-01 |
|
malt
|
public |
A tool for mapping metagenomic data
|
2024-02-01 |
|
chromograph
|
public |
Chromograph is a python package to create PNG images from genetics data such as BED and WIG files.
|
2024-02-01 |
|
ezaai
|
public |
EzAAI is a suite of workflows for improved AAI calculation performance
along with the novel module that provides hierarchical clustering analysis
and dendrogram representation.
|
2024-02-01 |
|
mosca
|
public |
MOSCA - Meta-Omics Software for Community Analysis
|
2024-01-30 |
|
ccsmeth
|
public |
Detecting DNA methylation from PacBio CCS read
|
2024-01-30 |
|
itol-config
|
public |
Package to create iTOL config files
|
2024-01-30 |
|
pycov3
|
public |
Generate cov3 files used in DEMIC
|
2024-01-29 |
|
sirius-csifingerid
|
public |
SIRIUS (CLI + GUI) LC-MS/MS data analyses framework. Includes: SIRIUS, ZODIAC, CSI:FingerID (with COSMIC) and CANOPUS
|
2024-01-27 |
|
comebin
|
public |
COMEBin allows effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning
|
2024-01-27 |
|
memote
|
public |
the genome-scale metabolic model test suite
|
2024-01-27 |
|
seqan3
|
public |
SeqAn3 is the new version of the popular SeqAn template library for the analysis of biological sequences.
|
2024-01-26 |
|
perl-biox-seq
|
public |
a basic but fast biological sequence object and associated parsers
|
2024-01-25 |
|
cgt
|
public |
Calculate a core genome threshold (cgt) from metagenome data
|
2024-01-25 |
|
sativa
|
public |
SATIVA Semi-Automatic Taxonomy Improvement and Validation Algorithm
|
2024-01-25 |
|
dnoise
|
public |
Denoise sequence data sets from Illumina using distance corrected according to the entropy of each codon position
|
2024-01-24 |
|
vcf2variants
|
public |
Convert vcf files to varda variant files.
|
2024-01-24 |
|
presto
|
public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
|
2024-01-24 |
|
crispector
|
public |
Accurate estimation of off-target editing activity from comparative NGS data
|
2024-01-24 |
|
svync
|
public |
A tool to standardize VCF files from structural variant callers
|
2024-01-23 |
|
nanometa-live
|
public |
Workflow and GUI for real-time species classification and pathogen characterization of nanopore sequence reads.
|
2024-01-22 |
|
kingfisher
|
public |
Download/extract biological FASTA/Q read data and metadata
|
2024-01-22 |
|
irissv
|
public |
Software for refining insertion sequences in structural variant calls
|
2024-01-22 |
|
metdatamodel
|
public |
Data models for metabolomics
|
2024-01-19 |
|
protmapper
|
public |
Map protein sites to human reference sequence.
|
2024-01-19 |
|
raiss
|
public |
SNP summary statistics imputation package
|
2024-01-18 |
|
gtfparse
|
public |
GTF Parsing
|
2024-01-17 |
