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vcfanno
|
public |
annotate a VCF with other VCFs/BEDs/tabixed files
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2024-04-19 |
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jolytree
|
public |
Fast alignment-free phylogenetic reconstruction from genome sequences
|
2024-04-19 |
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salty
|
public |
SaLTy assigns a lineage to Staphylococcus aureus WGS data and is suitable for describing large-scale S. aureus genomic epidemiology.
|
2024-04-19 |
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robust-bias-aware
|
public |
Robust bias aware.
|
2024-04-18 |
|
colabfold
|
public |
ColabFold: making protein folding accessible to all
|
2024-04-18 |
|
malva
|
public |
genotyping by Mapping-free ALternate-allele detection of known VAriants
|
2024-04-18 |
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segzoo
|
public |
System for turnkey analysis of semi-automated genome annotations
|
2024-04-18 |
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poly-qtlseq
|
public |
PolyploidQtlSeq is a program that extends QTL-seq for polyploid F1 populations.
|
2024-04-16 |
|
clippy
|
public |
An intuitive and interactive peak caller for CLIP data
|
2024-04-15 |
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monopogen
|
public |
Monopogen is an analysis package for SNV calling from single-cell sequencing datasets generated from single cell RNA 10x 5', 10x 3', single ATAC-seq technoloiges, scDNA-seq, etc.
|
2024-04-15 |
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helitronscanner
|
public |
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes
|
2024-04-14 |
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ribotricer
|
public |
Python package to detect translating ORF from Ribo-seq data
|
2024-04-14 |
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dmtools
|
public |
BS-seq, WGBS, NOMe-Seq, RRBS data storage and analysis tool dmtools
|
2024-04-14 |
|
igfinder
|
public |
A tool to extract Igh and Igl/Igk gene sequences from assembled transcripts
|
2024-04-14 |
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xxmotif
|
public |
No Summary
|
2024-04-14 |
|
gffutils
|
public |
Work with GFF and GTF files in a flexible database framework
|
2024-04-13 |
|
perl-parallel-loops
|
public |
Execute loops using parallel forked subprocesses
|
2024-04-13 |
|
maaslin2
|
public |
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between microbial meta'omic features and clinical metadata.
|
2024-04-13 |
|
bioconductor-enrichtf
|
public |
Transcription Factors Enrichment Analysis
|
2024-04-12 |
|
vgan
|
public |
Suite of tools for pangenomics built using vg
|
2024-04-12 |
|
panisa
|
public |
panISa is a software to search insertion sequence (IS) on resequencing data (bam file)
|
2024-04-10 |
|
checkatlas
|
public |
One liner tool to check the quality of your single-cell atlases.
|
2024-04-10 |
|
cutesv
|
public |
cuteSV is a long-read based human genomic structural variation detection tool
|
2024-04-10 |
|
getorganelle
|
public |
Get organelle genomes from genome skimming data
|
2024-04-10 |
|
isonform
|
public |
De novo construction of isoforms from long-read data
|
2024-04-09 |
|
pangu
|
public |
CYP2D6 PGx caller for PacBio HiFi Data
|
2024-04-09 |
|
attotree
|
public |
rapid estimation of phylogenetic trees using sketching
|
2024-04-09 |
|
atlas-gene-annotation-manipulation
|
public |
Scripts for manipulating gene annotation
|
2024-04-09 |
|
gmsc-mapper
|
public |
GMSC-mapper is a command line tool to query the Global Microbial smORFs Catalog (GMSC).
|
2024-04-09 |
|
seqsero2
|
public |
Salmonella serotype prediction from genome sequencing data
|
2024-04-08 |
|
ccmetagen
|
public |
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
|
2024-04-08 |
|
hifihla
|
public |
An HLA star-calling tool for PacBio HiFi data types
|
2024-04-05 |
|
ddrage
|
public |
Simulator for ddRADseq (double digest restriction site associated DNA sequencing) datasets. Generates reads (FASTQ format) that can be analyzed and validated using a ground truth file (YAML).
|
2024-04-05 |
|
locidex
|
public |
Locidex: Common search engine for similarity based typing applications
|
2024-04-04 |
|
phava
|
public |
Detection of invertons from long-read sequencing datasets
|
2024-04-04 |
|
ampligone
|
public |
Ampligone is a tool which accurately removes primer sequences from FastQ NGS reads in an amplicon sequencing experiment
|
2024-04-03 |
|
anansescanpy
|
public |
implementation of scANANSE for scanpy objects in Python
|
2024-04-03 |
|
pyega3
|
public |
EGA python client
|
2024-04-03 |
|
annotwg
|
public |
Tool for annotating large VCF files
|
2024-04-03 |
|
abacas
|
public |
ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
|
2024-04-03 |
|
gatk
|
public |
The full Genome Analysis Toolkit (GATK) framework, v3
|
2024-04-03 |
|
cgatcore
|
public |
CGAT : the Computational Genomics Analysis Toolkit
|
2024-04-02 |
|
lemur
|
public |
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
|
2024-04-01 |
|
bioconductor-cellhashr
|
public |
An R package designed to demultiplex cell hashing data.
More information in https://bimberlab.github.io/cellhashR/Lab B (2024).
cellhashR: A Package for Demultiplexing Cell Hashing Data.
|
2024-04-01 |
|
gmm-demux
|
public |
GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq).
|
2024-04-01 |
|
hybran
|
public |
Comparative prokaryotic genome annotation
|
2024-03-30 |
|
bcftools-gtc2vcf-plugin
|
public |
Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
|
2024-03-29 |
|
stecfinder
|
public |
Cluster informed Shigatoxin producing E. coli (STEC) serotyping tool from Illumina reads and assemblies
|
2024-03-29 |
|
igvtools
|
public |
Command line tools for IGV
|
2024-03-28 |
|
msgf_plus
|
public |
MS-GF+ is a MS/MS database search tool
|
2024-03-28 |
