| Package Name | Access | Summary | Updated |
|---|---|---|---|
| binny | public | An automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. Note: This is a development version. | 2025-04-22 |
| tadrep | public | TaDRep: Targeted Detection and Reconstruction of Plasmids | 2025-04-22 |
| kmd_hmdb_api_client | public | The KMD HMDB project API Client | 2025-04-22 |
| umi-transfer | public | A tool for transferring Unique Molecular Identifiers (UMIs) from a separate FastQ file. | 2025-04-22 |
| ipapy2 | public | Integrated Probabilistic Annotation (IPA) 2.0 - Python implementation | 2025-04-22 |
| physiofit | public | Calculate extracellular fluxes from metabolite concentrations and biomass data | 2025-04-22 |
| sativa | public | SATIVA Semi-Automatic Taxonomy Improvement and Validation Algorithm | 2025-04-22 |
| arcsv | public | A pipeline to detect SV in archaic human | 2025-04-22 |
| irf | public | Inverted Repeats Finder is a program that detects approximate inverted repeats. | 2025-04-22 |
| vcf2maf-umccr | public | Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms | 2025-04-22 |
| perl-minion-backend-sqlite | public | SQLite backend for Minion job queue | 2025-04-22 |
| perl-mojo-sqlite | public | A tiny Mojolicious wrapper for SQLite | 2025-04-22 |
| perl-sql-abstract-pg | public | PostgreSQL features for SQL::Abstract | 2025-04-22 |
| perl-uri-db | public | Database URIs | 2025-04-22 |
| perl-sql-abstract | public | Generate SQL from Perl data structures | 2025-04-22 |
| perl-json-validator | public | Validate data against a JSON schema | 2025-04-22 |
| perl-uri-nested | public | Nested URIs | 2025-04-22 |
| spclust | public | Spectral clustering for biological sequences | 2025-04-22 |
| condiga | public | ConDiGA: Contigs Directed Gene Annotation for accurate protein sequence database construction in metaproteomics | 2025-04-22 |
| snaketool-utils | public | Utility functions for Snaketool CLI for bioinformatics tools | 2025-04-22 |
| metasnek | public | Misc functions for metagenomics pipelines | 2025-04-22 |
| phynteny | public | Phynteny: Synteny-based prediction of bacteriophage genes | 2025-04-22 |
| pyeasyfuse | public | EasyFuse is a pipeline to detect fusion transcripts from RNA-seq data with high accuracy. The current version of EasyFuse uses two fusion gene detection tools, STAR-Fusion and Fusioncatcher along with a powerful read filtering strategy, stringent re-quantification of supporting reads and machine learning for highly accurate predictions. | 2025-04-22 |
| orfanage | public | Ultra-efficient and sensitive method to search for ORFs in spliced genomes guided by reference annotation to maximize protein similarity within genes. | 2025-04-22 |
| mira-multiome | public | Single-cell multiomics data analysis | 2025-04-22 |
