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dextractor
|
public |
Bax File Decoder and Data Compressor
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2024-12-11 |
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metaeuk
|
public |
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
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2024-12-11 |
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gfa1
|
public |
gfa1 toolkit
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2024-12-11 |
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plek
|
public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
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2024-12-11 |
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flash2
|
public |
Merge paired-end reads from fragments that are shorter than twice the read length
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2024-12-11 |
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plass
|
public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
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2024-12-11 |
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prequal
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public |
a pre-alignment quality filter for comparative sequence analyses
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2024-12-11 |
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perl-config-any
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public |
Load configuration from different file formats, transparently
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2024-12-11 |
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mdasim
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public |
This is MDAsim 2+, a tool to simulate whole genome amplification of a DNA sequence with multiple displacement amplification. A citation for this version will be provided when available. MDAsim 2+ extends MDAsim 1.2, so please also always cite: Tagliavi Z, Draghici S. MDAsim: A multiple displacement amplification simulator. 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2012. pp. 1–4. doi:10.1109/BIBM.2012.6392622
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2024-12-11 |
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blend-bio
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public |
BLEND is a Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis
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2024-12-11 |
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ucsc-hubpubliccheck
|
public |
checks that the labels in hubPublic match what is in the hub labels
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2024-12-11 |
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reffinder
|
public |
refFinder: Fast Lightweighttool for extracting nucleotides from fastafile using streams
|
2024-12-11 |
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sparseassembler
|
public |
No Summary
|
2024-12-11 |
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ucsc-gtftogenepred
|
public |
convert a GTF file to a genePred
|
2024-12-11 |
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mageck
|
public |
MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data.
|
2024-12-11 |
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perl-tie-hash-indexed
|
public |
Ordered hashes for Perl
|
2024-12-11 |
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r2r
|
public |
software to speed depiction of aesthetic consensus RNA secondary structures
|
2024-12-11 |
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rock
|
public |
ROCK - Reducing Over-Covering K-mers
|
2024-12-11 |
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bicseq2-norm
|
public |
BICseq2-norm is for normalizing potential biases in the sequencing data.
|
2024-12-11 |
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rtk2
|
public |
rtk2 - a CLI rarefaction toolkit for OTU tables
|
2024-12-11 |
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finemap
|
public |
Program for identifying causal SNPs and their effect sizes and heritability contributions
|
2024-12-11 |
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chromimpute
|
public |
ChromImpute is software for large-scale systematic epigenome imputation.
|
2024-12-11 |
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rnahybrid
|
public |
RNAhybrid is a tool for finding the minimum free energy hybridization of a long and a short RNA.
|
2024-12-11 |
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r-firebrowser
|
public |
An R client for broads firehose pipeline, providing TCGA data sets.
|
2024-12-11 |
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r-ddir
|
public |
An R package to access to Omics Discovery Index API
|
2024-12-11 |
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heinz
|
public |
The algorithm for identification of the optimal scoring subnetwork.
|
2024-12-11 |
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perl-filesys-df
|
public |
Perl extension for filesystem disk space information.
|
2024-12-11 |
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cryfa
|
public |
A secure encryption tool for genomic data
|
2024-12-11 |
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famseq
|
public |
Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi A, Davis RW, Huff V, Scharfe C, Wang W. Rare variant detection using family-based sequencing analysis. Proceedings of the National Academy of Sciences. 2013 Mar 5;110(10):3985-90
|
2024-12-11 |
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gemf_favites
|
public |
User-friendly epidemic simulations
|
2024-12-11 |
|
radtk
|
public |
A collection of tools for working with RAD files.
|
2024-12-11 |
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fineradstructure
|
public |
Inference of population structure from RAD datasets
|
2024-12-11 |
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rnaz
|
public |
predicting structural noncoding RNAs
|
2024-12-11 |
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ucsc-genepredtobiggenepred
|
public |
converts genePred or genePredExt to bigGenePred input (bed format with extra fields)
|
2024-12-11 |
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pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2024-12-11 |
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hardklor
|
public |
Analyze mass spectra
|
2024-12-11 |
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ucsc-checkcoveragegaps
|
public |
Check for biggest gap in coverage for a list of tracks.
|
2024-12-11 |
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debwt
|
public |
A efficient method to construct BWT index of a given DNA sequence, especially
useful for gigantic and high similar genome.
DeBWT has good scalability to construct BWT in parallel computing.
It is well-suited to run on multiple core servers or clusters to
construct the BWT of large collections of genome sequences.
|
2024-12-11 |
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verifybamid
|
public |
No Summary
|
2024-12-11 |
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ucsc-bamtopsl
|
public |
Convert a bam file to a psl and optionally also a fasta file that contains the reads.
|
2024-12-11 |
|
mentalist
|
public |
The MLST pipeline developed by the PathOGiST research group.
|
2024-12-11 |
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comet-ms
|
public |
Comet is a command line tool that does MS/MS database search.
|
2024-12-11 |
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ucsc-hgloadbed
|
public |
Load a generic bed file into database
|
2024-12-11 |
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ucsc-mafcoverage
|
public |
Analyse coverage by maf files - chromosome by
|
2024-12-11 |
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ucsc-hgloadoutjoined
|
public |
load new style (2014) RepeatMasker .out files into database
|
2024-12-11 |
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mutscan
|
public |
Detect and visualize target mutations by scanning FastQ files directly
|
2024-12-11 |
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rainbow
|
public |
Efficient tool for clustering and assembling short reads, especially for RAD
|
2024-12-11 |
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rabbitqcplus
|
public |
RabbitQCPlus is an efficient quality control tool for sequencing data
|
2024-12-11 |
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ucsc-liftup
|
public |
change coordinates of .psl, .agp, .gap, .gl, .out, .align, .gff, .gtf
|
2024-12-11 |
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treebest
|
public |
TreeBeST: Tree Building guided by Species Tree, used in the Ensembl Compara pipeline.
|
2024-12-11 |
