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fastme
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public |
a comprehensive, accurate and fast distance-based phylogeny inference program.
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2024-12-12 |
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alder
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public |
The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making inference about population admixture
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2024-12-12 |
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pblat
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public |
blat with multi-threads support
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2024-12-12 |
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goat
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public |
Query metadata for any taxon across the tree of life.
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2024-12-12 |
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autogrid
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public |
AutoDock is a suite of automated docking tools.
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2024-12-12 |
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perl-bloom-faster
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public |
Perl extension for the c library libbloom.
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2024-12-12 |
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emboss
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public |
The European Molecular Biology Open Software Suite
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2024-12-12 |
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dnp-fourier
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public |
Periodogram of dinucleotide frequency pattern
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2024-12-12 |
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disty
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public |
Disty McMatrixface - compute a distance matrix from a core genome alignment file.
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2024-12-12 |
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kseqpp
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public |
C++11 re-implementation of kseq by Heng Li
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2024-12-11 |
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hic-straw
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public |
Straw bound with pybind11
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2024-12-11 |
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radsex
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public |
The radsex software is part of RADSex, a computational workflow for the analysis of sex-determination using RAD-Sequencing data.
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2024-12-11 |
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dextractor
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public |
Bax File Decoder and Data Compressor
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2024-12-11 |
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metaeuk
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public |
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
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2024-12-11 |
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gfa1
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public |
gfa1 toolkit
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2024-12-11 |
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plek
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public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
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2024-12-11 |
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flash2
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public |
Merge paired-end reads from fragments that are shorter than twice the read length
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2024-12-11 |
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plass
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public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
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2024-12-11 |
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prequal
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public |
a pre-alignment quality filter for comparative sequence analyses
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2024-12-11 |
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perl-config-any
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public |
Load configuration from different file formats, transparently
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2024-12-11 |
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mdasim
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public |
This is MDAsim 2+, a tool to simulate whole genome amplification of a DNA sequence with multiple displacement amplification. A citation for this version will be provided when available. MDAsim 2+ extends MDAsim 1.2, so please also always cite: Tagliavi Z, Draghici S. MDAsim: A multiple displacement amplification simulator. 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2012. pp. 1–4. doi:10.1109/BIBM.2012.6392622
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2024-12-11 |
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blend-bio
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public |
BLEND is a Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis
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2024-12-11 |
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ucsc-hubpubliccheck
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public |
checks that the labels in hubPublic match what is in the hub labels
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2024-12-11 |
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reffinder
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public |
refFinder: Fast Lightweighttool for extracting nucleotides from fastafile using streams
|
2024-12-11 |
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sparseassembler
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public |
No Summary
|
2024-12-11 |
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ucsc-gtftogenepred
|
public |
convert a GTF file to a genePred
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2024-12-11 |
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mageck
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public |
MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data.
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2024-12-11 |
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perl-tie-hash-indexed
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public |
Ordered hashes for Perl
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2024-12-11 |
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r2r
|
public |
software to speed depiction of aesthetic consensus RNA secondary structures
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2024-12-11 |
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rock
|
public |
ROCK - Reducing Over-Covering K-mers
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2024-12-11 |
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bicseq2-norm
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public |
BICseq2-norm is for normalizing potential biases in the sequencing data.
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2024-12-11 |
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rtk2
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public |
rtk2 - a CLI rarefaction toolkit for OTU tables
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2024-12-11 |
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finemap
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public |
Program for identifying causal SNPs and their effect sizes and heritability contributions
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2024-12-11 |
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chromimpute
|
public |
ChromImpute is software for large-scale systematic epigenome imputation.
|
2024-12-11 |
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rnahybrid
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public |
RNAhybrid is a tool for finding the minimum free energy hybridization of a long and a short RNA.
|
2024-12-11 |
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r-firebrowser
|
public |
An R client for broads firehose pipeline, providing TCGA data sets.
|
2024-12-11 |
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r-ddir
|
public |
An R package to access to Omics Discovery Index API
|
2024-12-11 |
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heinz
|
public |
The algorithm for identification of the optimal scoring subnetwork.
|
2024-12-11 |
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perl-filesys-df
|
public |
Perl extension for filesystem disk space information.
|
2024-12-11 |
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cryfa
|
public |
A secure encryption tool for genomic data
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2024-12-11 |
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famseq
|
public |
Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi A, Davis RW, Huff V, Scharfe C, Wang W. Rare variant detection using family-based sequencing analysis. Proceedings of the National Academy of Sciences. 2013 Mar 5;110(10):3985-90
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2024-12-11 |
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gemf_favites
|
public |
User-friendly epidemic simulations
|
2024-12-11 |
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radtk
|
public |
A collection of tools for working with RAD files.
|
2024-12-11 |
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fineradstructure
|
public |
Inference of population structure from RAD datasets
|
2024-12-11 |
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rnaz
|
public |
predicting structural noncoding RNAs
|
2024-12-11 |
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ucsc-genepredtobiggenepred
|
public |
converts genePred or genePredExt to bigGenePred input (bed format with extra fields)
|
2024-12-11 |
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pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2024-12-11 |
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hardklor
|
public |
Analyze mass spectra
|
2024-12-11 |
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ucsc-checkcoveragegaps
|
public |
Check for biggest gap in coverage for a list of tracks.
|
2024-12-11 |
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debwt
|
public |
A efficient method to construct BWT index of a given DNA sequence, especially
useful for gigantic and high similar genome.
DeBWT has good scalability to construct BWT in parallel computing.
It is well-suited to run on multiple core servers or clusters to
construct the BWT of large collections of genome sequences.
|
2024-12-11 |
