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helitronscanner
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public |
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes
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2025-04-22 |
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dmtools
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public |
BS-seq, WGBS, NOMe-Seq, RRBS data storage and analysis tool dmtools
|
2025-04-22 |
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primers
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public |
This is a small, straightforward tool for creating PCR primers. Its target use-case is DNA assembly.
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2025-04-22 |
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igfinder
|
public |
A tool to extract Igh and Igl/Igk gene sequences from assembled transcripts
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2025-04-22 |
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localhgt
|
public |
Tools for dealing with SAM, BAM and CRAM files
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2025-04-22 |
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kpop
|
public |
An assembly-free and scalable method for the comparative analysis of microbial genomes, based on full k-mer spectra and dataset-specific transformations.
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2025-04-22 |
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mofapy2
|
public |
Multi-Omics Factor Analysis
|
2025-04-22 |
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galitime
|
public |
benchmarking of scientific computaional experiments
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2025-04-22 |
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pycomo
|
public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models.
|
2025-04-22 |
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isonform
|
public |
De novo construction of isoforms from long-read data
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2025-04-22 |
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jaeger-bio
|
public |
A quick and precise pipeline for detecting phages in sequence assemblies.
|
2025-04-22 |
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microview
|
public |
Generate reports from taxonomic classification data
|
2025-04-22 |
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gmsc-mapper
|
public |
GMSC-mapper is a command line tool to query the Global Microbial smORFs Catalog (GMSC).
|
2025-04-22 |
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mtgrasp
|
public |
reference-grade de novo animal mitochondrial genome assembly and standardization
|
2025-04-22 |
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test
|
public |
Test recipe, copied from the seqtk recipe
|
2025-04-22 |
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phava
|
public |
Detection of invertons from long-read sequencing datasets
|
2025-04-22 |
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rabbitqcplus
|
public |
RabbitQCPlus is an efficient quality control tool for sequencing data
|
2025-04-22 |
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bioconductor-cellhashr
|
public |
An R package designed to demultiplex cell hashing data.
More information in https://bimberlab.github.io/cellhashR/Lab B (2024).
cellhashR: A Package for Demultiplexing Cell Hashing Data.
|
2025-04-22 |
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gmm-demux
|
public |
GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq).
|
2025-04-22 |
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ntroot
|
public |
Ancestry inference from genomic data
|
2025-04-22 |
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primerforge
|
public |
primerForge: software to identify primers that can be used to distinguish genomes.
|
2025-04-22 |
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treeqmc
|
public |
TREE-QMC is a quartet-based method for estimating species trees from gene trees.
|
2025-04-22 |
|
lemur
|
public |
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
|
2025-04-22 |
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handyreadgenotyper
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2025-04-22 |
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reviewer
|
public |
A tool for visualizing alignments of reads in regions containing tandem repeats
|
2025-04-22 |
