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mbgc
|
public |
A tool for compressing collection of genomes in FASTA format
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2024-12-13 |
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bedtk
|
public |
Bedtk is a set of simple tools to process BED files.
|
2024-12-13 |
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dnp-diprofile
|
public |
Dinucleotide frequency of occurrence in a batch of fasta sequences
|
2024-12-13 |
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bfc
|
public |
BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data.
|
2024-12-13 |
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ucsc-hggcpercent
|
public |
Calculate GC Percentage in 20kb windows
|
2024-12-13 |
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ucsc-parafetch
|
public |
try to fetch url with multiple connections
|
2024-12-13 |
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ucsc-gmtime
|
public |
convert unix timestamp to date string
|
2024-12-13 |
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ucsc-subcolumn
|
public |
Substitute one column in a tab-separated file.
|
2024-12-13 |
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flexiplex
|
public |
flexiplex: the flexible demultiplexer
|
2024-12-13 |
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ucsc-farandomize
|
public |
Program to create random fasta records
|
2024-12-13 |
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ucsc-pslpretty
|
public |
Convert PSL to human-readable output
|
2024-12-13 |
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perl-crypt-openssl-random
|
public |
No Summary
|
2024-12-13 |
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razers3
|
public |
RazerS 3 - Faster, fully sensitive read mapping
|
2024-12-13 |
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bamtools
|
public |
C++ API & command-line toolkit for working with BAM data
|
2024-12-13 |
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ucsc-bedtopsl
|
public |
convert bed format files to psl format
|
2024-12-13 |
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ucsc-subchar
|
public |
Substitute one character for another throughout a file.
|
2024-12-13 |
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mcl
|
public |
MCL - a cluster algorithm for graphs
|
2024-12-13 |
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ffindex
|
public |
FFindex - A database wrapped around mmap.
|
2024-12-13 |
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eigensoft
|
public |
The EIGENSOFT package implements methods for analzing population structure and performing stratification correction
|
2024-12-13 |
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simlord
|
public |
SimLoRD is a read simulator for long reads from third generation sequencing. Currently, it supports the Pacific Biosciences SMRT error model.
|
2024-12-12 |
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ccphylo
|
public |
CCPhylo enables phylogenetic analysis of samples based on overlaps between nucleotide created by e.g. KMA. Input file(s) may be given as non-option arguments succeding all options.
|
2024-12-12 |
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bayescan
|
public |
Phylogenetics - Randomized Axelerated Maximum Likelihood.
|
2024-12-12 |
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cd-hit-auxtools
|
public |
Clusters and compares protein or nucleotide sequences
|
2024-12-12 |
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fastq-tools
|
public |
A collection of fastq manipulation scripts written in C for speed.
|
2024-12-12 |
|
eternafold
|
public |
RNA structure prediction algorithm improved through crowdsourced training data
|
2024-12-12 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2024-12-12 |
|
multiz
|
public |
DNA multiple sequence aligner from Penn State's Miller lab.
|
2024-12-12 |
|
canopy
|
public |
Canopy - Metagenomics Canopy Clustering Implementation
|
2024-12-12 |
|
genepop
|
public |
Population Genetic Data Analysis package.
|
2024-12-12 |
|
flexserv
|
public |
FlexServ protein structure conformational ensemble generation tools
|
2024-12-12 |
|
ucsc-fasomerecords
|
public |
Extract multiple fa records
|
2024-12-12 |
|
zagros
|
public |
No Summary
|
2024-12-12 |
|
perl-findbin-real
|
public |
Locates the full path to the script bin directory to allow the use of paths relative to the bin directory.
|
2024-12-12 |
|
gfatools
|
public |
Tools for manipulating sequence graphs in the GFA and rGFA formats
|
2024-12-12 |
|
perl-list-someutils
|
public |
Provide the stuff missing in List::Util
|
2024-12-12 |
|
bloocoo
|
public |
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory.
|
2024-12-12 |
|
isospecpy
|
public |
Python interface to IsoSpec++ isotopic envelope calculator library
|
2024-12-12 |
|
raptor
|
public |
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
|
2024-12-12 |
|
r-goalie
|
public |
Assertive check functions for defensive R programming.
|
2024-12-12 |
|
cofold
|
public |
An RNA secondary structure prediction method that takes co-transcriptional folding into account.
|
2024-12-12 |
|
nmrglue
|
public |
A module for working with NMR data in Python
|
2024-12-12 |
|
maxit
|
public |
MAXIT assists in the processing and curation of macromolecular structure data.
|
2024-12-12 |
|
abpoa
|
public |
abPOA: fast SIMD-based partial order alignment using adaptive band
|
2024-12-12 |
|
trf
|
public |
Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences.
|
2024-12-12 |
|
ucsc-countchars
|
public |
Count the number of occurrences of a particular char
|
2024-12-12 |
|
vcftools
|
public |
A set of tools written in Perl and C++ for working with VCF files. This package only contains the C++ libraries whereas the package perl-vcftools-vcf contains the perl libraries
|
2024-12-12 |
|
seqtk
|
public |
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
|
2024-12-12 |
|
ninja-nj
|
public |
Nearly Infinite Neighbor Joining Application
|
2024-12-12 |
|
scssim
|
public |
A bioinformatics tool for simulating single-cell genome sequencing data
|
2024-12-12 |
|
ucsc-wordline
|
public |
chop up words by white space and output them with one
|
2024-12-12 |
