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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-09-18 |
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augur
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public |
Process pathogen genome data for the Nextstrain platform
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2024-09-17 |
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repeatmasker
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public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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2024-09-17 |
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veryfasttree
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public |
VeryFastTree -- speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies.
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2024-09-17 |
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minute
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public |
MINUTE-ChIP data analysis workflow
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2024-09-17 |
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wally
|
public |
Visualization of aligned sequencing reads and genomic variants.
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2024-09-17 |
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earlgrey
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public |
Earl Grey: A fully automated TE curation and annotation pipeline
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2024-09-17 |
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busco
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public |
Assessment of assembly completeness using Universal Single Copy Orthologs
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2024-09-17 |
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genomepy
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public |
Install and use genomes & gene annotations the easy way!
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2024-09-17 |
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multiqc
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public |
Create aggregate bioinformatics analysis reports across many samples and tools.
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2024-09-17 |
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tracy
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public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
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2024-09-17 |
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vcflib
|
public |
Command-line tools for manipulating VCF files.
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2024-09-17 |
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gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
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2024-09-17 |
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medaka
|
public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
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2024-09-17 |
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hylight
|
public |
Strain aware assembly of low coverage metagenomes.
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2024-09-17 |
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im2deep
|
public |
Framework for prediction of collisional cross-section of peptides.
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2024-09-17 |
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transanno
|
public |
accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies
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2024-09-17 |
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vclean
|
public |
vClean: Assessing the contamination of viral genomes
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2024-09-17 |
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biophi
|
public |
BioPhi open-source antibody design platform.
|
2024-09-17 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
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2024-09-17 |
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fiji-omero_ij
|
public |
ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site.
|
2024-09-17 |
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mirtop
|
public |
Small RNA-seq annotation.
|
2024-09-17 |
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cellprofiler-core
|
public |
Dependency for CellProfiler v4.
|
2024-09-17 |
|
isoquant
|
public |
IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery.
|
2024-09-17 |
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snp-pileup
|
public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
|
2024-09-17 |
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microhapulator
|
public |
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
|
2024-09-17 |
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r-facets
|
public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
|
2024-09-17 |
|
pathphynder
|
public |
A workflow for ancient DNA placement into reference phylogenies.
|
2024-09-17 |
|
cnv_facets
|
public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
|
2024-09-17 |
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guidescan
|
public |
GuideScan is a tool for genome-wide CRISPR guide RNA (gRNA) design and analysis in custom genomes.
|
2024-09-16 |
|
viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
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2024-09-16 |
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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
|
2024-09-16 |
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r-recetox-aplcms
|
public |
apLCMS is a software which generates a feature table from a batch of LC/MS spectra. A modified fork of the original apLCMS by Tianwei Yu.
|
2024-09-16 |
|
alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2024-09-16 |
|
ppanggolin
|
public |
PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph
|
2024-09-16 |
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hackgap
|
public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
|
2024-09-16 |
|
vcf-validator
|
public |
EBI EVA - Validation tool to ensure VCF specification compliance
|
2024-09-16 |
|
olivar
|
public |
Olivar PCR tiling design
|
2024-09-16 |
|
srnamapper
|
public |
Mapping small RNA data to a genome.
|
2024-09-16 |
|
dnaapler
|
public |
Reorients assembled microbial sequences
|
2024-09-16 |
|
bx-python
|
public |
Tools for manipulating biological data, particularly multiple sequence alignments
|
2024-09-16 |
|
pymsaviz
|
public |
MSA visualization python package for sequence analysis
|
2024-09-15 |
|
grenedalf
|
public |
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
|
2024-09-15 |
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pronto
|
public |
Python frontend to ontologies
|
2024-09-15 |
|
dockq
|
public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
|
2024-09-14 |
|
zga
|
public |
Prokaryotic genome assembly and annotation pipeline
|
2024-09-13 |
|
cellxgene
|
public |
Web application for exploration of large scale scRNA-seq datasets
|
2024-09-13 |
|
bioutils
|
public |
miscellaneous simple bioinformatics utilities and lookup tables
|
2024-09-13 |
|
kleborate
|
public |
Kleborate: a tool for typing and screening pathogen genome assemblies
|
2024-09-13 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2024-09-13 |
