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bioconductor-outlierd
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public |
Outlier detection using quantile regression on the M-A scatterplots of high-throughput data
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2023-06-16 |
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bioconductor-flowutils
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public |
Utilities for flow cytometry
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2023-06-16 |
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bioconductor-mops
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public |
MoPS - Model-based Periodicity Screening
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2023-06-16 |
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bioconductor-mergemaid
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public |
Merge Maid
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2023-06-16 |
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bioconductor-birta
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public |
Bayesian Inference of Regulation of Transcriptional Activity
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2023-06-16 |
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bioconductor-maanova
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public |
Tools for analyzing Micro Array experiments
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2023-06-16 |
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bioconductor-birte
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public |
Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. biRte uses regulatory networks of TFs, miRNAs and possibly other factors, together with mRNA, miRNA and other available expression data to predict the relative influence of a regulator on the expression of its target genes. Inference is done in a Bayesian modeling framework using Markov-Chain-Monte-Carlo. A special feature is the possibility for follow-up network reverse engineering between active regulators.
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2023-06-16 |
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bioconductor-manta
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public |
Microbial Assemblage Normalized Transcript Analysis
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2023-06-16 |
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bioconductor-srap
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public |
Simplified RNA-Seq Analysis Pipeline
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2023-06-16 |
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bioconductor-bitseq
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public |
Transcript expression inference and differential expression analysis for RNA-seq data
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2023-06-16 |
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bioconductor-sspa
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public |
General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data
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2023-06-16 |
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bioconductor-sigpathway
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public |
Pathway Analysis
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2023-06-16 |
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bioconductor-rchemcpp
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public |
The Rchemcpp package implements the marginalized graph kernel and extensions, Tanimoto kernels, graph kernels, pharmacophore and 3D kernels suggested for measuring the similarity of molecules.
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2023-06-16 |
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r-vcfr
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public |
Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.
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2023-06-16 |
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bioconductor-imagehts
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public |
Analysis of high-throughput microscopy-based screens
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2023-06-16 |
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bioconductor-pgsea
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public |
Parametric Gene Set Enrichment Analysis
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2023-06-16 |
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bioconductor-flowrepositoryr
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public |
FlowRepository R Interface
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2023-06-16 |
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bioconductor-motiv
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public |
Motif Identification and Validation
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2023-06-16 |
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bioconductor-rnaprobr
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public |
An R package for analysis of massive parallel sequencing based RNA structure probing data
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2023-06-16 |
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bioconductor-psicquic
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public |
Proteomics Standard Initiative Common QUery InterfaCe
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2023-06-16 |
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bioconductor-polyfit
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public |
Add-on to DESeq to improve p-values and q-values
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2023-06-16 |
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bioconductor-starr
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public |
Simple tiling array analysis of Affymetrix ChIP-chip data
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2023-06-16 |
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bioconductor-metaarray
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public |
Integration of Microarray Data for Meta-analysis
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2023-06-16 |
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bioconductor-calib
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public |
Calibration model for estimating absolute expression levels from microarray data
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2023-06-16 |
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bioconductor-simpleaffy
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public |
Very simple high level analysis of Affymetrix data
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2023-06-16 |
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bioconductor-rama
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public |
Robust Analysis of MicroArrays
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2023-06-16 |
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bioconductor-pcot2
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public |
Principal Coordinates and Hotelling's T-Square method
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2023-06-16 |
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bioconductor-prada
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public |
Data analysis for cell-based functional assays
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2023-06-16 |
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bioconductor-ogsa
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public |
Outlier Gene Set Analysis
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2023-06-16 |
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bioconductor-vega
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public |
An R package for copy number data segmentation
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2023-06-16 |
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bioconductor-plethy
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public |
R framework for exploration and analysis of respirometry data
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2023-06-16 |
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bioconductor-affyexpress
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public |
Affymetrix Quality Assessment and Analysis Tool
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2023-06-16 |
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bioconductor-triform
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public |
Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data
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2023-06-16 |
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bioconductor-motifrg
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public |
A package for discriminative motif discovery, designed for high throughput sequencing dataset
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2023-06-16 |
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bioconductor-deseq
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public |
Differential gene expression analysis based on the negative binomial distribution
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2023-06-16 |
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r-maldiquantforeign
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public |
Functions for reading (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and writing (tab, csv, mMass MSD, mzML, imzML) different file formats of mass spectrometry data into/from 'MALDIquant' objects.
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2023-06-16 |
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r-qqman
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public |
Create Q-Q and manhattan plots for GWAS data from PLINK results.
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2023-06-16 |
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r-micropan
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public |
A collection of functions for computations and visualizations of microbial pan-genomes.
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2023-06-16 |
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nglview
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public |
An IPython widget to interactively view molecular structures and trajectories. Utilizes the embeddable NGL Viewer for rendering.
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2023-06-16 |
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bioconductor-hom.hs.inp.db
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public |
Homology information for Homo Sapiens from Inparanoid
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2023-06-16 |
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bioconductor-refnet
|
public |
A queryable collection of molecular interactions, from many sources
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2023-06-16 |
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bioconductor-sagx
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public |
Statistical Analysis of the GeneChip
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2023-06-16 |
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r-maldirppa
|
public |
Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data.
|
2023-06-16 |
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bioconductor-kegg.db
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public |
A set of annotation maps for KEGG
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2023-06-16 |
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bioconductor-fourcseq
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public |
Package analyse 4C sequencing data
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2023-06-16 |
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bioconductor-biocinstaller
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public |
This package is used to install and update Bioconductor, CRAN, and (some) github packages.
|
2023-06-16 |
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bioconductor-decomplexdisease
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public |
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
|
2023-06-03 |
