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bioconductor-harman
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public |
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
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2024-12-14 |
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r-facets
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public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
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2024-12-14 |
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bioconductor-rnadecay
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public |
Maximum Likelihood Decay Modeling of RNA Degradation Data
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2024-12-14 |
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bioconductor-xina
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public |
Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network Analysis
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2024-12-14 |
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bioconductor-unifiedwmwqpcr
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public |
Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
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2024-12-14 |
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bioconductor-opweight
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public |
Optimal p-value weighting with independent information
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2024-12-14 |
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r-jackstraw
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public |
Test for association between the observed data and their systematic patterns of variations. Systematic patterns may be captured by latent variables using principal component analysis (PCA), factor analysis (FA), and related methods. The jackstraw enables statistical testing for association between observed variables and latent variables, as captured by PCs or other estimates. Similarly, unsupervised clustering, such as K-means clustering, partition around medoids (PAM), and others, finds subpopulations among the observed variables. The jackstraw estimates statistical significance of cluster membership, including unsupervised evaluation of cell identities in single cell RNA-seq. P-values and posterior probabilities allows one to rigorously evaluate the strength of cluster membership assignments.
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2024-12-14 |
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bioconductor-swfdr
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public |
Estimation of the science-wise false discovery rate and the false discovery rate conditional on covariates
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2024-12-14 |
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bioconductor-parglms
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public |
support for parallelized estimation of GLMs/GEEs
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2024-12-14 |
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bioconductor-onlinefdr
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public |
Online error rate control
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2024-12-14 |
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bioconductor-parody
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public |
Parametric And Resistant Outlier DYtection
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2024-12-14 |
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bioconductor-rgsea
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public |
Random Gene Set Enrichment Analysis
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2024-12-14 |
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bioconductor-rseqan
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public |
R SeqAn
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2024-12-14 |
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bioconductor-rrho
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public |
Inference on agreement between ordered lists
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2024-12-14 |
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bioconductor-mvcclass
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public |
Model-View-Controller (MVC) Classes
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2024-12-14 |
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bioconductor-sights
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public |
Statistics and dIagnostic Graphs for HTS
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2024-12-14 |
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bioconductor-sparsenetgls
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public |
Using Gaussian graphical structue learning estimation in generalized least squared regression for multivariate normal regression
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2024-12-14 |
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r-isva
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public |
Independent Surrogate Variable Analysis is an algorithm for feature selection in the presence of potential confounding factors (see Teschendorff AE et al 2011, <doi: 10.1093/bioinformatics/btr171>).
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2024-12-14 |
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bioconductor-timescape
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public |
Patient Clonal Timescapes
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2024-12-14 |
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bioconductor-phosphonormalizer
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public |
Compensates for the bias introduced by median normalization in
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2024-12-14 |
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bioconductor-ggtree
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public |
an R package for visualization of tree and annotation data
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2024-12-14 |
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bioconductor-preprocesscore
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public |
A collection of pre-processing functions
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2024-12-14 |
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bioconductor-diffgeneanalysis
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public |
Performs differential gene expression Analysis
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2024-12-14 |
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bioconductor-diffustats
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public |
Diffusion scores on biological networks
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2024-12-14 |
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bioconductor-asset
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public |
An R package for subset-based association analysis of heterogeneous traits and subtypes
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2024-12-14 |
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bioconductor-clst
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public |
Classification by local similarity threshold
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2024-12-14 |
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bioconductor-inpower
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public |
An R package for computing the number of susceptibility SNPs
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2024-12-14 |
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bioconductor-ctc
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public |
Cluster and Tree Conversion.
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2024-12-14 |
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bioconductor-isolde
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public |
Integrative Statistics of alleLe Dependent Expression
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2024-12-14 |
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bioconductor-rcaspar
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public |
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
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2024-12-14 |
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bioconductor-gsar
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public |
Gene Set Analysis in R
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2024-12-14 |
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bioconductor-cqn
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public |
Conditional quantile normalization
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2024-12-14 |
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bioconductor-epivizrserver
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public |
WebSocket server infrastructure for epivizr apps and packages
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2024-12-14 |
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bioconductor-isocorrector
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public |
Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
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2024-12-14 |
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bioconductor-antiprofiles
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public |
Implementation of gene expression anti-profiles
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2024-12-14 |
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bioconductor-swathxtend
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public |
SWATH extended library generation and statistical data analysis
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2024-12-14 |
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bioconductor-metacca
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public |
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
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2024-12-14 |
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bioconductor-rnaseqcomp
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public |
Benchmarks for RNA-seq Quantification Pipelines
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2024-12-14 |
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bioconductor-cosnet
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public |
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings
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2024-12-14 |
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bioconductor-iaseq
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public |
iASeq: integrating multiple sequencing datasets for detecting allele-specific events
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2024-12-14 |
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bioconductor-pepxmltab
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public |
Parsing pepXML files and filter based on peptide FDR.
|
2024-12-14 |
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bioconductor-frgepistasis
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public |
Epistasis Analysis for Quantitative Traits by Functional Regression Model
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2024-12-14 |
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bioconductor-rlmm
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public |
A Genotype Calling Algorithm for Affymetrix SNP Arrays
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2024-12-14 |
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bioconductor-mergeomics
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public |
Integrative network analysis of omics data
|
2024-12-14 |
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bioconductor-widgettools
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public |
Creates an interactive tcltk widget
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2024-12-14 |
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bioconductor-dyndoc
|
public |
Dynamic document tools
|
2024-12-14 |
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bioconductor-rbiopaxparser
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public |
Parses BioPax files and represents them in R
|
2024-12-14 |
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bioconductor-roc
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public |
utilities for ROC, with microarray focus
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2024-12-14 |
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bioconductor-scbn
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public |
A statistical normalization method and differential expression analysis for RNA-seq data between different species
|
2024-12-14 |
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bioconductor-messina
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public |
Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems
|
2024-12-14 |
