bioconductor-normalize450k
|
public |
Preprocessing of Illumina Infinium 450K data
|
2024-12-16 |
bioconductor-ecolitk
|
public |
Meta-data and tools for E. coli
|
2024-12-16 |
bioconductor-biodist
|
public |
Different distance measures
|
2024-12-16 |
bioconductor-progeny
|
public |
Pathway RespOnsive GENes for activity inference from gene expression
|
2024-12-16 |
bioconductor-plpe
|
public |
Local Pooled Error Test for Differential Expression with Paired High-throughput Data
|
2024-12-16 |
bioconductor-bayesknockdown
|
public |
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
|
2024-12-16 |
bioconductor-river
|
public |
R package for RIVER (RNA-Informed Variant Effect on Regulation)
|
2024-12-16 |
bioconductor-mipp
|
public |
Misclassification Penalized Posterior Classification
|
2024-12-16 |
bioconductor-a4preproc
|
public |
Automated Affymetrix Array Analysis Preprocessing Package
|
2024-12-16 |
bioconductor-mfuzz
|
public |
Soft clustering of omics time series data
|
2024-12-16 |
bioconductor-lapmix
|
public |
Laplace Mixture Model in Microarray Experiments
|
2024-12-16 |
bioconductor-rbsurv
|
public |
Robust likelihood-based survival modeling with microarray data
|
2024-12-16 |
r-classdiscovery
|
public |
Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
|
2024-12-16 |
bioconductor-hybridmtest
|
public |
Hybrid Multiple Testing
|
2024-12-16 |
bioconductor-gwastools
|
public |
Tools for Genome Wide Association Studies
|
2024-12-16 |
bioconductor-aims
|
public |
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
|
2024-12-16 |
bioconductor-clippda
|
public |
A package for the clinical proteomic profiling data analysis
|
2024-12-16 |
r-aroma.core
|
public |
Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
|
2024-12-16 |
bioconductor-ihw
|
public |
Independent Hypothesis Weighting
|
2024-12-16 |
bioconductor-interactivedisplaybase
|
public |
Base package for enabling powerful shiny web displays of Bioconductor objects
|
2024-12-16 |
bioconductor-ctdquerier
|
public |
Package for CTDbase data query, visualization and downstream analysis
|
2024-12-16 |
bioconductor-rpx
|
public |
R Interface to the ProteomeXchange Repository
|
2024-12-16 |
bioconductor-famagg
|
public |
Pedigree Analysis and Familial Aggregation
|
2024-12-16 |
bioconductor-ldblock
|
public |
data structures for linkage disequilibrium measures in populations
|
2024-12-16 |
bioconductor-browserviz
|
public |
BrowserViz: interactive R/browser graphics using websockets and JSON
|
2024-12-16 |
bioconductor-methylmnm
|
public |
detect different methylation level (DMR)
|
2024-12-16 |
bioconductor-gcatest
|
public |
Genotype Conditional Association TEST
|
2024-12-16 |
bioconductor-msstats
|
public |
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
|
2024-12-16 |
bioconductor-affyio
|
public |
Tools for parsing Affymetrix data files
|
2024-12-16 |
bioconductor-rsubread
|
public |
Mapping, quantification and variant analysis of sequencing data
|
2024-12-16 |
bioconductor-ndexr
|
public |
NDEx R client library
|
2024-12-15 |
bioconductor-dupradar
|
public |
Assessment of duplication rates in RNA-Seq datasets
|
2024-12-15 |
bioconductor-philr
|
public |
Phylogenetic partitioning based ILR transform for metagenomics data
|
2024-12-15 |
bioconductor-clstutils
|
public |
Tools for performing taxonomic assignment
|
2024-12-15 |
bioconductor-rebet
|
public |
The subREgion-based BurdEn Test (REBET)
|
2024-12-15 |
bioconductor-olingui
|
public |
Graphical user interface for OLIN
|
2024-12-15 |
bioconductor-simd
|
public |
Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site
|
2024-12-15 |
bioconductor-arrayquality
|
public |
Assessing array quality on spotted arrays
|
2024-12-15 |
bioconductor-nnnorm
|
public |
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
|
2024-12-15 |
bioconductor-olin
|
public |
Optimized local intensity-dependent normalisation of two-color microarrays
|
2024-12-15 |
bioconductor-stepnorm
|
public |
Stepwise normalization functions for cDNA microarrays
|
2024-12-15 |
bioconductor-rbm
|
public |
RBM: a R package for microarray and RNA-Seq data analysis
|
2024-12-15 |
bioconductor-erccdashboard
|
public |
Assess Differential Gene Expression Experiments with ERCC Controls
|
2024-12-15 |
bioconductor-compcoder
|
public |
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
|
2024-12-15 |
bioconductor-proper
|
public |
PROspective Power Evaluation for RNAseq
|
2024-12-15 |
r-htscluster
|
public |
A Poisson mixture model is implemented to cluster genes from high- throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is performed using either the EM or CEM algorithm, and the slope heuristics are used for model selection (i.e., to choose the number of clusters).
|
2024-12-15 |
r-nbpseq
|
public |
Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.
|
2024-12-15 |
bioconductor-degseq
|
public |
Identify Differentially Expressed Genes from RNA-seq data
|
2024-12-15 |
bioconductor-rdisop
|
public |
Decomposition of Isotopic Patterns
|
2024-12-15 |
bioconductor-lea
|
public |
LEA: an R package for Landscape and Ecological Association Studies
|
2024-12-15 |