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Package Name Access Summary Updated
bioconductor-normalize450k public Preprocessing of Illumina Infinium 450K data 2024-12-16
bioconductor-ecolitk public Meta-data and tools for E. coli 2024-12-16
bioconductor-biodist public Different distance measures 2024-12-16
bioconductor-progeny public Pathway RespOnsive GENes for activity inference from gene expression 2024-12-16
bioconductor-plpe public Local Pooled Error Test for Differential Expression with Paired High-throughput Data 2024-12-16
bioconductor-bayesknockdown public BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data 2024-12-16
bioconductor-river public R package for RIVER (RNA-Informed Variant Effect on Regulation) 2024-12-16
bioconductor-mipp public Misclassification Penalized Posterior Classification 2024-12-16
bioconductor-a4preproc public Automated Affymetrix Array Analysis Preprocessing Package 2024-12-16
bioconductor-mfuzz public Soft clustering of omics time series data 2024-12-16
bioconductor-lapmix public Laplace Mixture Model in Microarray Experiments 2024-12-16
bioconductor-rbsurv public Robust likelihood-based survival modeling with microarray data 2024-12-16
r-classdiscovery public Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance. 2024-12-16
bioconductor-hybridmtest public Hybrid Multiple Testing 2024-12-16
bioconductor-gwastools public Tools for Genome Wide Association Studies 2024-12-16
bioconductor-aims public AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype 2024-12-16
bioconductor-clippda public A package for the clinical proteomic profiling data analysis 2024-12-16
r-aroma.core public Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'. 2024-12-16
bioconductor-ihw public Independent Hypothesis Weighting 2024-12-16
bioconductor-interactivedisplaybase public Base package for enabling powerful shiny web displays of Bioconductor objects 2024-12-16
bioconductor-ctdquerier public Package for CTDbase data query, visualization and downstream analysis 2024-12-16
bioconductor-rpx public R Interface to the ProteomeXchange Repository 2024-12-16
bioconductor-famagg public Pedigree Analysis and Familial Aggregation 2024-12-16
bioconductor-ldblock public data structures for linkage disequilibrium measures in populations 2024-12-16
bioconductor-browserviz public BrowserViz: interactive R/browser graphics using websockets and JSON 2024-12-16
bioconductor-methylmnm public detect different methylation level (DMR) 2024-12-16
bioconductor-gcatest public Genotype Conditional Association TEST 2024-12-16
bioconductor-msstats public Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments 2024-12-16
bioconductor-affyio public Tools for parsing Affymetrix data files 2024-12-16
bioconductor-rsubread public Mapping, quantification and variant analysis of sequencing data 2024-12-16
bioconductor-ndexr public NDEx R client library 2024-12-15
bioconductor-dupradar public Assessment of duplication rates in RNA-Seq datasets 2024-12-15
bioconductor-philr public Phylogenetic partitioning based ILR transform for metagenomics data 2024-12-15
bioconductor-clstutils public Tools for performing taxonomic assignment 2024-12-15
bioconductor-rebet public The subREgion-based BurdEn Test (REBET) 2024-12-15
bioconductor-olingui public Graphical user interface for OLIN 2024-12-15
bioconductor-simd public Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site 2024-12-15
bioconductor-arrayquality public Assessing array quality on spotted arrays 2024-12-15
bioconductor-nnnorm public Spatial and intensity based normalization of cDNA microarray data based on robust neural nets 2024-12-15
bioconductor-olin public Optimized local intensity-dependent normalisation of two-color microarrays 2024-12-15
bioconductor-stepnorm public Stepwise normalization functions for cDNA microarrays 2024-12-15
bioconductor-rbm public RBM: a R package for microarray and RNA-Seq data analysis 2024-12-15
bioconductor-erccdashboard public Assess Differential Gene Expression Experiments with ERCC Controls 2024-12-15
bioconductor-compcoder public RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods 2024-12-15
bioconductor-proper public PROspective Power Evaluation for RNAseq 2024-12-15
r-htscluster public A Poisson mixture model is implemented to cluster genes from high- throughput transcriptome sequencing (RNA-seq) data. Parameter estimation is performed using either the EM or CEM algorithm, and the slope heuristics are used for model selection (i.e., to choose the number of clusters). 2024-12-15
r-nbpseq public Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data. 2024-12-15
bioconductor-degseq public Identify Differentially Expressed Genes from RNA-seq data 2024-12-15
bioconductor-rdisop public Decomposition of Isotopic Patterns 2024-12-15
bioconductor-lea public LEA: an R package for Landscape and Ecological Association Studies 2024-12-15

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