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bioconductor-spikein
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public |
Affymetrix Spike-In Experiment Data
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2024-12-19 |
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bioconductor-makecdfenv
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public |
CDF Environment Maker
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2024-12-19 |
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bioconductor-panp
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public |
Presence-Absence Calls from Negative Strand Matching Probesets
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2024-12-19 |
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bioconductor-cardinal
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public |
A mass spectrometry imaging toolbox for statistical analysis
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2024-12-19 |
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bioconductor-flowtime
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public |
Annotation and analysis of biological dynamical systems using flow cytometry
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2024-12-19 |
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bioconductor-cghregions
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public |
Dimension Reduction for Array CGH Data with Minimal Information Loss.
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2024-12-19 |
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r-hemdag
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public |
a collection of Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs).
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2024-12-19 |
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bioconductor-cormotif
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public |
Correlation Motif Fit
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2024-12-19 |
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bioconductor-cytodx
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public |
Robust prediction of clinical outcomes using cytometry data without cell gating
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2024-12-19 |
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r-cp4p
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public |
Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
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2024-12-19 |
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bioconductor-affydata
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public |
Affymetrix Data for Demonstration Purpose
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2024-12-19 |
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r-mutoss
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public |
Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'.
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2024-12-19 |
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bioconductor-abarray
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public |
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
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2024-12-19 |
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bioconductor-rain
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public |
Rhythmicity Analysis Incorporating Non-parametric Methods
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2024-12-19 |
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bioconductor-paircompviz
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public |
Multiple comparison test visualization
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2024-12-19 |
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bioconductor-biocviews
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public |
Categorized views of R package repositories
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2024-12-19 |
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bioconductor-a4classif
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public |
Automated Affymetrix Array Analysis Classification Package
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2024-12-19 |
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bioconductor-stategra
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public |
Classes and methods for multi-omics data integration
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2024-12-19 |
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bioconductor-aracne.networks
|
public |
ARACNe-inferred gene networks from TCGA tumor datasets
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2024-12-19 |
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bioconductor-curatedbladderdata
|
public |
Bladder Cancer Gene Expression Analysis
|
2024-12-19 |
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bioconductor-cghcall
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public |
Calling aberrations for array CGH tumor profiles.
|
2024-12-19 |
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bioconductor-cycle
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public |
Significance of periodic expression pattern in time-series data
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2024-12-19 |
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bioconductor-flowclean
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public |
flowClean
|
2024-12-18 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2024-12-18 |
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bioconductor-simat
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public |
GC-SIM-MS data processing and alaysis tool
|
2024-12-18 |
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bioconductor-chimphumanbraindata
|
public |
Chimp and human brain data package
|
2024-12-18 |
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bioconductor-consensusclusterplus
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public |
ConsensusClusterPlus
|
2024-12-18 |
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bioconductor-diggitdata
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public |
Example data for the diggit package
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2024-12-18 |
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bioconductor-tronco
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public |
TRONCO, an R package for TRanslational ONCOlogy
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2024-12-18 |
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bioconductor-flowbeads
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public |
flowBeads: Analysis of flow bead data
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2024-12-18 |
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r-diffcorr
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public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
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2024-12-18 |
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bioconductor-cll
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public |
A Package for CLL Gene Expression Data
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2024-12-18 |
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bioconductor-metabomxtr
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public |
A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
|
2024-12-18 |
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r-tidygenomics
|
public |
Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.
|
2024-12-18 |
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bioconductor-dirichletmultinomial
|
public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
|
2024-12-18 |
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bioconductor-metaseq
|
public |
Meta-analysis of RNA-Seq count data in multiple studies
|
2024-12-18 |
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bioconductor-ampaffyexample
|
public |
Example of Amplified Data
|
2024-12-18 |
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bioconductor-turbonorm
|
public |
A fast scatterplot smoother suitable for microarray normalization
|
2024-12-18 |
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bioconductor-ruvnormalize
|
public |
RUV for normalization of expression array data
|
2024-12-18 |
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bioconductor-ruvcorr
|
public |
Removal of unwanted variation for gene-gene correlations and related analysis
|
2024-12-18 |
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bioconductor-tmixclust
|
public |
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
|
2024-12-18 |
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bioconductor-gwasdata
|
public |
Data used in the examples and vignettes of the GWASTools package
|
2024-12-18 |
|
bioconductor-complexheatmap
|
public |
Make Complex Heatmaps
|
2024-12-18 |
|
bioconductor-derfinderhelper
|
public |
derfinder helper package
|
2024-12-18 |
|
r-perfmeas
|
public |
Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
|
2024-12-18 |
|
bioconductor-nethet
|
public |
A bioconductor package for high-dimensional exploration of biological network heterogeneity
|
2024-12-18 |
|
bioconductor-flowchic
|
public |
Analyze flow cytometric data using histogram information
|
2024-12-18 |
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r-imputelcmd
|
public |
The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.
|
2024-12-18 |
|
bioconductor-nucleosim
|
public |
Generate synthetic nucleosome maps
|
2024-12-18 |
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bioconductor-scde
|
public |
Single Cell Differential Expression
|
2024-12-18 |
