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Package Name Access Summary Updated
bioconductor-scran public Methods for Single-Cell RNA-Seq Data Analysis 2024-12-27
bioconductor-deseq2 public Differential gene expression analysis based on the negative binomial distribution 2024-12-27
bioconductor-xcms public LC-MS and GC-MS Data Analysis 2024-12-27
bioconductor-buscorrect public Batch Effects Correction with Unknown Subtypes 2024-12-27
bioconductor-msnbase public Base Functions and Classes for Mass Spectrometry and Proteomics 2024-12-27
bioconductor-apeglm public Approximate posterior estimation for GLM coefficients 2024-12-27
bioconductor-monocle public Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq 2024-12-27
bioconductor-ioniser public Quality Assessment Tools for Oxford Nanopore MinION data 2024-12-27
bioconductor-systempiper public systemPipeR: Workflow Environment for Data Analysis and Report Generation 2024-12-26
bioconductor-rsvsim public RSVSim: an R/Bioconductor package for the simulation of structural variations 2024-12-26
bioconductor-dada2 public Accurate, high-resolution sample inference from amplicon sequencing data 2024-12-26
bioconductor-eatonetalchipseq public ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010 2024-12-26
bioconductor-sevenc public Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs 2024-12-26
r-gkmsvm public Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. 2024-12-26
bioconductor-wiggleplotr public Make read coverage plots from BigWig files 2024-12-26
bioconductor-plyranges public A fluent interface for manipulating GenomicRanges 2024-12-26
bioconductor-dmchmm public Differentially Methylated CpG using Hidden Markov Model 2024-12-26
bioconductor-chipenrich.data public Companion package to chipenrich 2024-12-26
bioconductor-roar public Identify differential APA usage from RNA-seq alignments 2024-12-26
bioconductor-seqsetvis public Set Based Visualizations for Next-Gen Sequencing Data 2024-12-26
bioconductor-hitc public High Throughput Chromosome Conformation Capture analysis 2024-12-26
bioconductor-consensusseeker public Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges 2024-12-26
bioconductor-r3cseq public Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq) 2024-12-26
bioconductor-chromheatmap public Heat map plotting by genome coordinate 2024-12-26
bioconductor-excluster public ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition 2024-12-26
bioconductor-ideoviz public Plots data (continuous/discrete) along chromosomal ideogram 2024-12-26
bioconductor-normr public Normalization and difference calling in ChIP-seq data 2024-12-26
r-sigqc public Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics. 2024-12-26
bioconductor-motifdb public An Annotated Collection of Protein-DNA Binding Sequence Motifs 2024-12-26
bioconductor-scpipe public Pipeline for single cell multi-omic data pre-processing 2024-12-26
bioconductor-coverageview public Coverage visualization package for R 2024-12-26
bioconductor-gseabenchmarker public Reproducible GSEA Benchmarking 2024-12-26
bioconductor-enrichmentbrowser public Seamless navigation through combined results of set-based and network-based enrichment analysis 2024-12-26
bioconductor-tigre public Transcription factor Inference through Gaussian process Reconstruction of Expression 2024-12-26
bioconductor-gseabase public Gene set enrichment data structures and methods 2024-12-26
bioconductor-preda public Position Related Data Analysis 2024-12-26
bioconductor-globaltest public Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing 2024-12-26
bioconductor-codelink public Manipulation of Codelink microarray data 2024-12-26
bioconductor-mgfm public Marker Gene Finder in Microarray gene expression data 2024-12-26
bioconductor-semdist public Information Accretion-based Function Predictor Evaluation 2024-12-26
bioconductor-idiogram public idiogram 2024-12-26
bioconductor-mirnameconverter public Convert miRNA Names to Different miRBase Versions 2024-12-26
bioconductor-ragene10sttranscriptcluster.db public Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster) 2024-12-26
bioconductor-rgu34c.db public Affymetrix Affymetrix RG_U34C Array annotation data (chip rgu34c) 2024-12-26
bioconductor-raex10stprobeset.db public Affymetrix raex10 annotation data (chip raex10stprobeset) 2024-12-26
bioconductor-ragene10stprobeset.db public Affymetrix ragene10 annotation data (chip ragene10stprobeset) 2024-12-26
bioconductor-ragene20stprobeset.db public Affymetrix ragene20 annotation data (chip ragene20stprobeset) 2024-12-26
bioconductor-ragene21sttranscriptcluster.db public Affymetrix ragene21 annotation data (chip ragene21sttranscriptcluster) 2024-12-26
bioconductor-lumiratall.db public Illumina Rat Illumina expression annotation data (chip lumiRatAll) assembled using data from public repositories 2024-12-26
bioconductor-clariomsrattranscriptcluster.db public Affymetrix clariomsrat annotation data (chip clariomsrattranscriptcluster) 2024-12-26
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