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pronto
|
public |
Python frontend to ontologies.
|
2025-02-16 |
|
ucsc-cell-browser
|
public |
A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend.
|
2025-02-14 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-02-14 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-02-14 |
|
t-coffee
|
public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
|
2025-02-14 |
|
mbuffer
|
public |
mbuffer is a tool for buffering data streams with a large set of unique features
|
2025-02-14 |
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intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2025-02-13 |
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randfold
|
public |
No Summary
|
2025-02-13 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-02-13 |
|
hmmer2
|
public |
No Summary
|
2025-02-12 |
|
pullseq
|
public |
No Summary
|
2025-02-12 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-02-12 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-02-12 |
|
regtools
|
public |
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
|
2025-02-12 |
|
star
|
public |
An RNA-seq read aligner.
|
2025-02-12 |
|
quicktree
|
public |
Fast implementation of the neighbour-joining phylogenetic inference method
|
2025-02-12 |
|
iqtree
|
public |
Efficient phylogenomic software by maximum likelihood.
|
2025-02-12 |
|
sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2025-02-11 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-02-11 |
|
perl-aceperl
|
public |
Object-Oriented Access to ACEDB Databases
|
2025-02-11 |
|
fiji
|
public |
Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
|
2025-02-11 |
|
nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2025-02-11 |
|
libidn
|
public |
No Summary
|
2025-02-10 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-02-10 |
|
tmalign
|
public |
TM-align sequence-order independent protein structure alignment.
|
2025-02-10 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2025-02-09 |
|
confindr
|
public |
Detect intra- and inter-species bacterial contamination in NGS reads.
|
2025-02-07 |
|
perl-mime-types
|
public |
Definition of MIME types
|
2025-02-07 |
|
bioconductor-fgsea
|
public |
Fast Gene Set Enrichment Analysis
|
2025-02-07 |
|
bioconductor-xcms
|
public |
LC-MS and GC-MS Data Analysis
|
2025-02-07 |
|
bioconductor-camera
|
public |
Collection of annotation related methods for mass spectrometry data
|
2025-02-07 |
|
bioconductor-massspecwavelet
|
public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
|
2025-02-07 |
|
bioconductor-globalancova
|
public |
Global test for groups of variables via model comparisons
|
2025-02-06 |
|
bioconductor-msnbase
|
public |
Base Functions and Classes for Mass Spectrometry and Proteomics
|
2025-02-06 |
|
bioconductor-multtest
|
public |
Resampling-based multiple hypothesis testing
|
2025-02-06 |
|
bioconductor-rbgl
|
public |
An interface to the BOOST graph library
|
2025-02-06 |
|
bioconductor-delayedarray
|
public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
|
2025-02-06 |
|
bioconductor-mzr
|
public |
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
|
2025-02-06 |
|
bioconductor-affyio
|
public |
Tools for parsing Affymetrix data files
|
2025-02-06 |
|
bioconductor-rhdf5lib
|
public |
hdf5 library as an R package
|
2025-02-06 |
|
bioconductor-vsn
|
public |
Variance stabilization and calibration for microarray data
|
2025-02-06 |
|
bioconductor-affy
|
public |
Methods for Affymetrix Oligonucleotide Arrays
|
2025-02-06 |
|
bioconductor-genomicranges
|
public |
Representation and manipulation of genomic intervals
|
2025-02-06 |
|
dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
|
2025-02-06 |
|
bioconductor-rgraphviz
|
public |
Provides plotting capabilities for R graph objects
|
2025-02-06 |
|
bioconductor-genefilter
|
public |
genefilter: methods for filtering genes from high-throughput experiments
|
2025-02-06 |
|
bioconductor-graph
|
public |
graph: A package to handle graph data structures
|
2025-02-06 |
|
bioconductor-preprocesscore
|
public |
A collection of pre-processing functions
|
2025-02-06 |
|
bioconductor-sva
|
public |
Surrogate Variable Analysis
|
2025-02-06 |
|
bioconductor-edger
|
public |
Empirical Analysis of Digital Gene Expression Data in R
|
2025-02-06 |
