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hyphy
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public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
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2025-03-20 |
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somaticseq
|
public |
An ensemble approach to accurately detect somatic mutations.
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2025-03-19 |
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perl-extutils-depends
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public |
Easily build XS extensions that depend on XS extensions.
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2025-03-19 |
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bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
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2025-03-19 |
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repeatmasker
|
public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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2025-03-19 |
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bioconductor-flowworkspace
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public |
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
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2025-03-19 |
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ngs-bits
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public |
Short-read sequencing tools
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2025-03-19 |
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bioconductor-cellnoptr
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public |
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
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2025-03-19 |
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bioconductor-rgadem
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public |
de novo motif discovery
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2025-03-19 |
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bioconductor-rbowtie
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public |
R bowtie wrapper
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2025-03-19 |
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bioconductor-deepsnv
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public |
Detection of subclonal SNVs in deep sequencing data.
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2025-03-19 |
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bioconductor-aseb
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public |
Predict Acetylated Lysine Sites
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2025-03-19 |
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bioconductor-beaddatapackr
|
public |
Compression of Illumina BeadArray data
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2025-03-19 |
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bioconductor-tweedeseq
|
public |
RNA-seq data analysis using the Poisson-Tweedie family of distributions
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2025-03-19 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2025-03-19 |
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bioconductor-cn.mops
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public |
cn.mops - Mixture of Poissons for CNV detection in NGS data
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2025-03-19 |
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bioconductor-titancna
|
public |
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
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2025-03-19 |
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bioconductor-oligo
|
public |
Preprocessing tools for oligonucleotide arrays
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2025-03-19 |
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bioconductor-ncdfflow
|
public |
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
|
2025-03-19 |
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bioconductor-rots
|
public |
Reproducibility-Optimized Test Statistic
|
2025-03-19 |
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bioconductor-mosaics
|
public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
|
2025-03-19 |
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bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2025-03-19 |
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bioconductor-bacon
|
public |
Controlling bias and inflation in association studies using the empirical null distribution
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2025-03-19 |
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starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
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2025-03-19 |
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ncbi-vdb
|
public |
SRA tools database engine.
|
2025-03-19 |
|
perl-html-tidy
|
public |
(X)HTML validation in a Perl object
|
2025-03-19 |
|
tidyp
|
public |
Program for cleaning up and validating HTML
|
2025-03-19 |
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last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-03-18 |
|
bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2025-03-18 |
|
maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2025-03-18 |
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ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2025-03-18 |
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gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2025-03-18 |
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plink
|
public |
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
|
2025-03-18 |
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fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2025-03-18 |
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dsh-bio
|
public |
Tools for BED, FASTA, FASTQ, GAF, GFA1/2, GFF3, PAF, SAM, and VCF files
|
2025-03-18 |
|
canu
|
public |
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing.
|
2025-03-17 |
|
perl-xml-libxslt
|
public |
Interface to GNOME libxslt library
|
2025-03-17 |
|
python-newick
|
public |
A python module to read and write the Newick format.
|
2025-03-17 |
|
illumina-interop
|
public |
The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores).
|
2025-03-17 |
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pybedtools
|
public |
Wraps BEDTools for use in Python and adds many additional features.
|
2025-03-17 |
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ectyper
|
public |
ECtyper is a python program for serotyping E. coli genomes
|
2025-03-15 |
|
kraken
|
public |
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
|
2025-03-14 |
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perl-io-compress
|
public |
IO Interface to compressed data files/buffers
|
2025-03-14 |
|
bioconductor-gsva
|
public |
Gene Set Variation Analysis for Microarray and RNA-Seq Data
|
2025-03-13 |
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perl-data-dump
|
public |
Pretty printing of data structures
|
2025-03-13 |
|
percolator
|
public |
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
|
2025-03-13 |
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xsd
|
public |
No Summary
|
2025-03-13 |
|
r-ggbiplot
|
public |
A biplot based on ggplot2
|
2025-03-13 |
|
python-edlib
|
public |
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
|
2025-03-13 |
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r-lncpipereporter
|
public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
|
2025-03-13 |
